Scomber japonicus (chub mackerel): 128356810 Help Entry 128356810         CDS       T09718                                  Symbol col2a1a Name (RefSeq) collagen, type II, alpha 1a   KO K19719   collagen type II alpha Organism sjo  Scomber japonicus (chub mackerel) Pathway sjo04510   Focal adhesion sjo04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:sjo00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     128356810 (col2a1a)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     128356810 (col2a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sjo00536]     128356810 (col2a1a) Glycosaminoglycan binding proteins [BR:sjo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    128356810 (col2a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  128356810 NCBI-ProteinID:  XP_053172922 LinkDB All DBs Position 4:complement(27899956..27921206) Genome browser AA seq 1490 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSVVRCQDEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG PRGPSGPMGPSGEQGPRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPAGPAGPPGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEAGEPGPAG PMGPRGPSGPSGKSGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG AKGETGAAGAKGEGGSSGENGAPGPMGPRGLPGERGRPGAAGSAGARGNDGLPGPAGPPG PVGPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEGGTPGSPGPAGASGNPGTDGIPG AKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPGG PQGPPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG ASGPKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARG QPGVMGFPGPKGANGESGKPGEKGLLGRTGLRGLPGKDGETGASGPSGPAGPAGERGEQG QPGPSGFQGLPGPSGSPGEAGKPGDQGVPGEGGAPGAAGPRGERGFPGERGGAGTQGLQG PRGLPGTPGTDGPKGAIGPAGAPGSQGPPGLQGMPGERGTGGIPGAKGDRGDGGAKGPEG APGKDGSRGLTGPIGPPGPSGPNGAKGETGPSGPSGAPGTRGAPGDRGEGGPPGPAGFAG PPGADGQPGAKGELGEGGQKGEAGAPGPQGPSGAPGPVGPTGVNGPKGARGAQGAPGATG FPGAAGRVGSPGPNGNPGASGPAGPAGKDGPKGARGDAGLPGRQGDAGLRGPSGAPGEKG EPGEDGPAGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGSSGDRG PPGPVGPPGLTGPSGETGREGTPGADGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGSPG PVGPLGKQGDRGESGAQGPAGPPGSAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTG LQGLPGPPGPSGDAGSSGPAGPNGAKGPPGPSGPAGKDGSNGQPGPLGPPGPRGRSGESG PAGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSGDPLRYMRADEASSSLRQHDVEVDS TLKSLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNM ETGETCVYPSIASVPKKNWWTSKSKDRKHVWFGETMNGGFHFDYAQDGPAASAANVQLTF LRLLSNEASQNFTYHCKNSIAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG CKKHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta ctatccgtggtcagatgtcaggatgaggacgaccaggaggcaggtggctgcatccaggac ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgt gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt gagacgattggtgctaagggccagaaaggcgaaccaggcgagattgcagatgttgtagga ccaagaggaccatcaggccctatgggcccctcaggtgagcagggaccacgtggagaagct ggcgctaagggtgataagggaaatgctggacctagaggaagagatggtgagcctggaacc cctggaaaccccggacccgctggcccagctggaccacctggaccaccagggcttggaggg aactttgctgctcagatggctggaggatttgatgagaaggccggaggcgctcagatgggt gtgatgcaaggaccaatgggtcctatgggtcctcgtggtccccccggacctagtggatct cctggaccacagggtttccaaggatcccctggagaggctggagagcctggtccagctgga ccaatgggacctcgtggaccatccggaccttctggaaaatcaggaagtgatggtgaagct ggcaaacctggaaaggctggtgagcgtggacctgctgggcctcagggagctcgtggattc cctggaactcctggacttcctggaatcaaaggacacagaggtcatcctggtctggatgga gccaagggagagactggtgctgcaggagccaagggtgagggtggttcttccggagagaat ggtgcccctggacccatgggtccacgtggtctgcctggtgagaggggacgtcctggagct gctggatctgcaggtgcccgtggaaatgatggtctgcctggtcctgctggtccaccaggg cctgttggtcctgctggagcccccggtttcccaggatccccaggagccaagggagaagct ggtcctactggagcccgtggagcagaaggtcaacagggaccccgcggagagggtggtacc ccaggatctcccggacccgccggagcatcgggtaaccccggaactgatggtatccctgga gctaaaggatccgctggtgcttctggtattgctggagctcctggattccccggccctcgt ggacccccaggaccacagggagcaacaggacctcttgggcccaagggacagtctggagac cctggtcttcctggattcaaaggagaagctggacccaaaggagagcttggccctggtggt ccccaaggtccccctggacctgctggtgaggaaggaaagagaggcgctagaggagagcct ggagctgctggaccacttggacctccaggagagagaggagctcccggtaaccgtggtttc ccaggtcaggatggtcttgctggtgctaagggtgcccctggcgaccgtggtgttcctggt gcttctgggcctaaaggtgctactggagaccccggacgcacaggagagtctggcctcccc ggagccagaggtcttactggccgtcctggagatgctggtcctcaaggcaaagttggaccc tctggtgctgctggtgaggatggtcgccccggcccacctggtcctcagggagcccgtgga cagcctggagtgatgggattccctggaccaaagggagccaatggtgaatctggaaagcca ggagagaagggtcttttgggtcgcactggtctgagaggtctgcctggaaaggatggtgag actggtgctagtggaccttctggccctgctggacccgctggagaaagaggagagcaagga cagcccggaccttctggcttccagggtctgcctggaccatctggttccccaggagaggct ggaaaacctggagatcagggtgttcctggagagggcggagctcctggtgctgctggacca agaggtgagcgtggtttccctggtgagaggggtggtgctggaactcagggtcttcaggga ccccgtggacttcctggaacacctggaactgatggacccaagggagctattggaccagct ggtgctcctggatcccagggaccccccggcctgcagggtatgcccggagagagaggaact ggtggcatcccaggagccaagggagacagaggtgatggcggcgcaaaggggcctgaggga gctcctggaaaggacggctctagaggtttgactggccccatcggccctccaggcccatct ggacccaacggagccaagggtgagactggaccctctggaccttctggtgctcctggtact cgcggtgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggctttgctgga cctcctggtgcagatggtcagcctggtgctaagggagagctcggtgagggtggacagaag ggagaagctggtgctcctggacctcagggaccatctggggctcctggacctgtgggaccc actggtgtaaatggacctaaaggagcacgtggtgctcagggagctcctggtgccactggt ttccctggtgctgctggcagagttggatctcctggtcccaatggtaaccctggcgcttct ggccctgccggtcctgctggtaaagatggaccaaagggtgcccgtggtgatgctggactc ccaggaagacagggagatgctggccttcgtggtccttctggtgcaccaggagagaaggga gagcctggagaggatggaccagctggtgctgatgggccttcaggtccacagggtctggct ggatctcgtggtattgttggtctgcctggtcagcgtggagagagaggcttccctggtctc cctggaccttctggagagcccggcaaacagggatcttctggaagtagtggcgaccgtgga cctcctggacctgtgggaccccctggacttactggaccttctggagagactggaagagag ggtacccctggagcagatggacctcctggtagggatggatctactggagtcaagggagag cgtggtaacactggtcctgctggcgcccctggagctcccggtgcccctggttctcctgga cccgtcggacctctcggcaagcagggagacagaggagagtctggtgctcaaggacctgca ggacctcctggatctgctggcgcaagaggaatggctggacctcaaggaccacgtggagac aagggagaggctggtgaggctggagagaggggacagaagggtcaccgtggattcactggt ctgcagggtcttcctggacctcctggcccctctggagatgctggatcttctggacccgca ggaccaaatggtgctaagggaccacctggaccaagcggacctgctggcaaagatggatct aatggacagcctggcccacttggaccccctggacctcgtggacgctctggagagtctggc cctgctggtcctcctggtaacgctggaccccctggtcctcctggccctcctggtcccggc atcgatatgtctgcctttgccggtctgggtcagactgagaagtccggtgatcctctcagg tacatgagggctgatgaggcctccagctccctgaggcagcacgatgttgaggttgattct acactcaagtccctcaacaaccagattgagaacctgcgcagccctgatggctcccagaag aaccctgctcgcacctgcagagacctgaaactgtgccaccctgagtggaagagtggtgac tactgggttgatcccaacattggtagcacagctgatgccatcaaggtcttctgtaacatg gagactggagagacctgcgtctacccaagcatcgccagtgtaccaaagaagaactggtgg accagcaagagcaaggaccgcaagcatgtctggttcggagagaccatgaatggaggattc catttcgactacgctcaggatggccccgctgccagcgctgccaatgtccagctgaccttc ttgaggcttttgtccaatgaagcatcccagaacttcacttaccactgcaagaacagcatt gcctacatggatcaggccacaggcaacctgaagaaagctttgctgctgcagggctccaac gatgtggagatccgcgcagaaggcaacagccgcttcacatacagcgtgttggaggatggc tgcaagaaacacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacc tcccgtctgccaattgtagacattgctcctatggatatcggaggagcggatcaggagttc ggagtggatgtaggcgcagtctgcttcttgtaa

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