KEGG   Scomber japonicus (chub mackerel): 128356904
Entry
128356904         CDS       T09718                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03030  DNA replication
sjo03410  Base excision repair
sjo03420  Nucleotide excision repair
sjo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    128356904 (rfc2)
   03410 Base excision repair
    128356904 (rfc2)
   03420 Nucleotide excision repair
    128356904 (rfc2)
   03430 Mismatch repair
    128356904 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sjo03032]
    128356904 (rfc2)
   03036 Chromosome and associated proteins [BR:sjo03036]
    128356904 (rfc2)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128356904 (rfc2)
DNA replication proteins [BR:sjo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    128356904 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    128356904 (rfc2)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    128356904 (rfc2)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     128356904 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    128356904 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 nSTAND_NTPase5 AAA_14 AAA_lid_RFC1 RCF1-5-like_lid AAA_16 Viral_helicase1 AAA_11 Rad17 Mg_chelatase nSTAND3 DEAD AAA_5 AAA_19 MipZ RuvB_N AAA_28 DNAX_ATPase_lid AAA_assoc_2 AAA_30 AAA_18 SLFN-g3_helicase AAA_23 NTPase_1 AAA_25 ABC_tran AAA_24 MeaB RNA_helicase AMP-binding_C_3 MCM T2SSE AAA_2
Other DBs
NCBI-GeneID: 128356904
NCBI-ProteinID: XP_053173065
LinkDB
Position
4:complement(35867148..35871155)
AA seq 345 aa
MAEQKEQKEEMEVMEAEQKQPAGSYQLPWVEKYRPLQLQHVVGNHETVSRLQVFAREGNV
PNIIISGPPGTGKTTSILCLARALLGGSMKEAVLELNASNERGIDVVRNKIKMFAQQKVT
LPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLR
YSKLTDGQILSRLQEVVEQERLSASDDGLEAVIFTAQGDMRQALNNLQSTHSGFGFINSD
NVFKVCDEPHPLLVKGMLGHCVEGNISEAYRVVEQLWALGYSPEDIIGNIFRVCKTFTMA
EYLKLEFIKEIGYTHMRVTEGVNSLLQMAGLLGRLCSKTAPPAGC
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggcggagcagaaggagcagaaggaggagatggaggtgatggaggctgagcagaagcag
ccagcgggaagctaccagctgccctgggtggagaagtaccggccgctgcagctgcagcac
gtggtgggaaaccacgagaccgtcagcaggctgcaggtgttcgcgcgggaggggaacgtg
cccaacatcatcatatccggcccccccggcacggggaagaccaccagcatcttgtgtctg
gctcgagctctgctgggaggatccatgaaggaagcagttctggagctcaacgcctccaac
gagagaggcatcgatgtggtgaggaacaagatcaagatgtttgctcagcagaaagtgacg
cttcctaaaggacgacacaagatcatcatcctggacgaagccgacagtatgacggacggg
gctcagcaggctctgaggagaatcatggagatttactcaaagacgactcgcttcgctctc
gcctgcaacgcgtcagataaaatcatcgagccgatccagtctcgctgcgccgtgctgcgt
tactccaagctgacggacggacagatcctgtcccggctgcaggaagtggtggagcaggag
cgtctgtccgcgtccgacgacgggctggaggccgtcatcttcacggctcagggagacatg
agacaggcgctgaacaacctgcagtccactcactccggcttcggattcatcaacagcgac
aacgtgttcaaagtgtgcgacgagccccaccccctgctggtgaaaggcatgctgggacac
tgcgtggaggggaacatcagcgaggcgtaccgcgtggtggagcagctgtgggcgctcggt
tactcccccgaagacatcatcgggaacatcttcagggtctgcaagaccttcaccatggcc
gagtacctgaagctggagttcattaaggagatcggttacacacacatgcgagtgactgaa
ggagtgaactctctgctgcagatggccggtctgctgggtcgactctgcagtaagacggcg
ccccctgctggctgctga

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