Scomber japonicus (chub mackerel): 128356931
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Entry
128356931 CDS
T09718
Symbol
nphp4
Name
(RefSeq) nephrocystin-4
KO
K16478
nephrocystin-4
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sjo03037
]
128356931 (nphp4)
Cilium and associated proteins [BR:
sjo03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
128356931 (nphp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2155
NT-C2
Motif
Other DBs
NCBI-GeneID:
128356931
NCBI-ProteinID:
XP_053173093
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All DBs
Position
4:complement(10993943..11155031)
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AA seq
1441 aa
AA seq
DB search
MADGWREVFESSRLVPPHSQTVRLAADRHSNRSQGFQLSLSRLTTAPRPEEVSDLEQDLM
CQLRVTLFDRNHQHFFGKTWKSPPQKMKNNKISFNEVLYFHTSLQLPSTVVVLELVSLSP
RPDGSQQALGRGFTVLELFTNRPEAQTADGDRRLNLHHGSPRSLLHPLLKDTVDYSSLFK
SIDGAHLICVVKSHPALVTMMHLLPENILVSGDENIPGLAASPAGDALLRPQLLKMLPFT
LNRLTISLQPSLEKFESQLLQLINADCHNTKQPGPEGTARTVVIQERRLHVGVHNGWCFL
EKPQVVVLEPLALGARGRADTLTKDSSATSPLPQTLTLRSNLELRLTNHQALAVIFQLEY
VFSAPIGRETMLSTTSTPRAAFLQCLRWGIWCPFQDSADWKGEEIQLVLQGGAKPNPHGV
MVYSTELFAKTPSPVPLSAPGTAQVSEAKDMIMFRLSSSLERKASSPKASLKTKQEDVSC
QRRSPSSPSKGKYHVIPVSPPRSPQGPGLSLSQLAATSRYPTISHSSSALPWQQSFPSLL
HPSPLASAHQLSHVACSAVTNIAHLEMALQVDKDVPPSAQDEGDQLQELPFTPVHAPVIT
LGLSAPSSFSVSSRSSLAHIHSAGFPDIVDYSGQVAEVLDPTEPVPFDPHREETDPLQGN
LLVFQFLAFTRIPTAGVGPDWPDNIYFTFQFYRFPPVTSQQLRLLTSDKVQQKAGDPLPC
VMTTINKDGTVNSDSPGLQVQFKVDEGFLRPREKRWFLRYMALHTMHIDIWDSDSLLLIG
STAIQLKYMLRHGKSAVQALHEVEVLTTDYVGDDTLLASADLGRHSASNPLTVQTILRGR
LHIRTGNIGCPGGPSRRRAADVMSSLPHIITPRKVTGGFRGGSLCSRNILQLNARNAAQA
QRLHRDEAYMPLLRRGIKADTITPAEHVLNEPDGGRRKLNRMAAVHQREGKESPKVTDRT
KEARLARDLQPINPCEEHNKTEAIANMLSQAITTQHLLYTSLGSAEYMEFVLKNPFNVPQ
TITIYSDDSELSVITNTEEWRYFKALTKTPTSLEENMFHLDESAPGPRVYLRPKESIHIP
LKYQSFLCDHSMALQGPSFLPSGKGSQMAKKNLSNIVAAKTIKVTFKTDDGKPVAICQVN
VEPTPHVVDQTFRLYHPELCFLKKAIRLPPWHDPTVGDPDTRTHISVRCSDPNIVCQTRM
LVPGEPQDVYLKVPGSPSPHIKMFFVMVFTDKWMAAPSQIWQIYVHFMERVDISCITGQR
SCQSLVLRGKQAVRKVECFSSHPQEIKVDPEGVFVLPPAAVQELQLKVQPWRAGSRFLYV
NAVDVEHRRLVTAWLLCLSVHRPVLSKAFEVSVPVGGGRGSSRKITYTNPYTSSRKFLLR
SDHPDLLQFKEDKFQIGGGESYTIGLRFAPSQSPGSVEILVYVNNLEEKTEETFCVKVSY
S
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggctggagagaagtgttcgagagcagccggttggttcccccgcacagccag
acagtccgcctggccgcggatagacactccaaccggtcccagggcttccagctcagcctt
agccggctcaccacagctccacggccggaggaggtgtcagatttggaacaagatctgatg
tgccagctgcgagtgaccctgtttgacagaaatcaccagcacttctttgggaaaacatgg
aagagcccaccccagaagatgaaaaacaacaagatctccttcaatgaggtcctgtacttc
cacacgtcgctacagttgcccagcactgtggtggtcctggagctggtgtcattgtcaccc
aggccagatggctctcagcaggccctggggcgaggcttcactgtcttggagctttttacc
aacaggccagaggctcagactgctgatggggacagaagattgaatctacaccatggatca
ccaaggagcctcctccatcccctgctgaaggacactgttgactacagcagtctcttcaag
agtatcgatggagcacatttgatctgtgtggtgaaaagccatcctgcactggttaccatg
atgcacctccttccagagaatatccttgtgtctggagatgagaacattcctggacttgca
gcctctccagcaggagatgctctgctgaggcctcagctgctcaagatgctgcccttcacc
ctgaacagactgaccatctccctccagccgtccctggagaagtttgagagccagctgctg
cagctgatcaatgcggactgccataacacgaaacagccaggaccagagggtacagcgagg
acagttgtcattcaggaaagaaggctccatgttggggtccacaatggctggtgtttcctt
gagaagccccaagtggtggttctggaacccctagccttaggagccagagggcgagcagac
accctgaccaaagacagctcagcaacatcaccccttcctcagacgctaactcttcgaagc
aacctggagctccggctgaccaatcatcaggctttagcagtcattttccaactggaatat
gtgttctctgctccaattggtcgagagactatgctgtctaccacctccacacctcgagcg
gccttcctgcagtgccttcgttgggggatttggtgcccctttcaggattcggctgactgg
aagggggaagagatacagcttgttctgcaaggaggcgcaaagccaaaccctcacggagtc
atggtctacagcacagaactgtttgccaaaactccaagccctgtgccactgtcagcaccg
ggcacagctcaggtctcggaggcaaaagatatgataatgtttcggctgtcatccagtctg
gaaaggaaggcatccagcccgaaggcgtctctgaagacaaagcaggaggatgtgtcatgt
cagaggagatcaccttcatcaccctcaaagggtaaatatcatgtaatcccagtttctcct
ccaagatcacctcaaggccctgggctctcactgtctcagctggcagctacttcacgctac
ccaactatcagccactccagctcagcgttaccgtggcaacagtcatttccttctctgctt
catccttccccgttggcatcggcccaccagctgtcacatgtcgcctgctcagctgtcacc
aatattgcccacctagagatggctcttcaggtagacaaggatgtgccaccttcagctcag
gatgaaggagaccaacttcaggagctgcccttcacccctgtccacgctcctgtcatcact
cttgggttgagtgcaccaagttccttctcagtcagctccagaagctcgctggcccacatc
cactctgctggcttccctgacatcgtggactatagtgggcaggtggcagaagtgctggac
cccacagagcccgtgccctttgacccccaccgtgaagagactgaccctctacagggcaac
ctgctggtgttccagtttctagcatttaccagaataccaacggcgggggttggtcctgat
tggcccgacaacatctactttaccttccagttctaccgctttccaccagtcacgtcgcag
cagctcagactactgaccagtgacaaggttcagcagaaagctggtgatccacttccttgt
gtcatgaccaccatcaacaaagacggcactgtcaactccgactctccagggctgcaggtg
cagttcaaagtagatgagggtttcctgaggcccagagagaagcgctggttccttcgctat
atggccctccacaccatgcacattgacatctgggacagtgactcattgctcctcataggt
tctactgccatccagctcaagtacatgttacgtcacggtaaatcggcagtgcaggcactt
catgaggttgaggtgctgaccaccgattacgtgggagacgacaccctgctggcgagtgcg
gatttgggccgacactcagcctccaaccccttgacggtccagactattctcagaggccgg
ctgcatatacgcacaggaaacatagggtgcccaggaggtcccagcaggaggagggcagca
gatgtgatgtcgtctcttcctcacatcatcacacctcgcaaagtcactggtggcttcaga
ggaggcagcctgtgctccaggaacatcctgcaacttaatgcgagaaatgcagcgcaagca
cagaggctgcacagagacgaggcgtacatgccgctgttgagacgggggatcaaagctgac
accatcacgcccgcggagcacgtcctaaacgagcctgacggtgggcgccgcaagctcaac
cgcatggctgccgtgcaccagcgtgagggcaaggaatcgcctaaggtcacggatcggact
aaggaagcccggttggctagagatcttcagccgatcaatccatgtgaagaacacaacaag
acagaggccatcgccaacatgctgagccaggccatcaccacccagcacctgctctacaca
agcctggggtctgctgagtacatggagtttgtcctcaaaaacccctttaatgtaccccag
accatcaccatctacagtgatgattccgagctcagtgtcatcactaacacagaggagtgg
cgttacttcaaagcactaaccaaaactcctacctcgctggaggagaacatgtttcacttg
gacgagagtgccccaggtcccagggtttacctccggcctaaggagagcatccacattccc
ctgaaataccagagcttcctctgcgaccacagcatggcccttcagggaccgagcttccta
ccttcgggcaaaggttctcaaatggccaagaagaatctatccaatattgttgctgccaaa
acaatcaaggttacgttcaaaacagacgatggcaagccagtggccatctgccaggtcaat
gtggagccgacaccccacgttgttgaccagactttcagactgtaccaccctgagctgtgt
ttcctcaaaaaggccatccgcctgccgccatggcacgaccccacagttggagacccagac
accaggactcacatatccgtacgctgcagtgaccctaacattgtctgccagacaaggatg
ctggtgccaggggagcctcaggatgtgtacttaaaagtgccagggagtcccagtccacac
attaaaatgttctttgtgatggtttttactgataagtggatggcggcgccctcccagatc
tggcagatttacgtgcattttatggagcgggtggacatcagctgtataactggccagagg
agctgtcaatcgttggtgttgaggggaaagcaagctgttcgcaaggtcgaatgtttctca
tcacaccctcaggagatcaaggtggaccccgagggtgtgtttgttttgcctcctgcagcg
gtgcaggagctccagctgaaggtgcagccatggcgggcaggcagccgcttcctgtatgtg
aacgcggtggacgttgagcaccggcggcttgtcaccgcctggctgctttgtctcagtgtt
caccggcctgtgctgtccaaggcatttgaagtgagcgtcccggtcggtggtggtcgtggc
agctccaggaaaatcacctacaccaacccttacaccagcagccgcaaattcctgcttcgc
tccgaccatccagatctgctccagttcaaagaggacaaattccagattggaggtggagaa
agttacaccatcggactgcgattcgcccccagccagagtcctggctcagtggagatcctg
gtctacgtgaacaacctggaggagaagacggaggagacgttctgtgtgaaagtcagctac
tcatga
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