Scomber japonicus (chub mackerel): 128357078 Help Entry 128357078         CDS       T09718                                  Name (RefSeq) collagen alpha-1(XX) chain-like   KO K24357   collagen type XX alpha Organism sjo  Scomber japonicus (chub mackerel) SSDB OrthologParalogGene clusterGFIT Motif Pfam:  fn3 VWA Collagen TPT Pur_ac_phosph_N Ig_DSCAM-DSCAML_C VWA_2 FN3_Tor_3rd DUF4959 EamA UAA Motif Other DBs NCBI-GeneID:  128357078 NCBI-ProteinID:  XP_053173292 LinkDB All DBs Position 4:complement(6336652..6380918) Genome browser AA seq 1913 aa AA seqDB search MAFPVQVICRAARTVGLVLFYYVFSIGITFYNKWLMKGFHYPLFMTLVHLALNFCLSALT RWAMQCWTGKPRIILGWTDYIYKVTPTALATALDIGLSNWSFLFITISLYTMTKSSAVLF ILFFSLVFKLEEPNPYLILVVLLISSGLFMFTFESTQFNLEGFTMVLMAAFIGGIRWTLT QVLMQKAELGLQNPVDAMYHLQPVMFLCLFPLFLYNEALSLSTSEKLFRASGPSPLLHSL FLLSIGGVLAFGLGFSEFLLVARTSSLTLSISGIFKEVCTLLLAAALMGDKMSMLNWLGF VVCLCGISLHVGLKTYYSKNKGPSLRQLSSKSPELELPLLRQNGDEREDSPADDEDEEQE ITLHLSVLLLSGVRGQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVRPISEVPQPELML TTTRGRATVAGLDSSQEYTLQVLVLNGTTEKLLAKRRFTMESLREEEMIRSGSREQKKKM LPGGSGSGDLDDVTEALLGLPTILYPDPMTTTTAALPDDALEKTPKEKRKRKKDRERDRS KAENKEEQGTTQGKPAEEKPRKTPFPTQPVTGMSPRRPFICESDGAADIMLLVDGSWSIG RTNFRRVRDFLEGLITPFHIGPDNIQIGLTQYSGDPRTEWHLNNFTTKDQLLEAVRNFRY KGGNTFTGQALLHIMEENMRTESGARLDTPFFLVLLTDGKSQDDAIAAANRLKNAGVEII AVGVKNADEAELRQVASEPVDLNVYNVNDFPLLSKLVARLVHILCARIEDRGISKRMDPG PTADPALSYPSPSDLRFSDLGSREVKLHWTNPAKSVQQYRVVYHSAEGQSPQEVVVAGSE STVLLEGLSSQTLYHVSIFPVYEHNVGLALRGTVTTLPLAMPANLEVTPSSYSTLRVSWG AAPGATQYMILYSALNHGEPDDAKEEKFSADHTVVELAGLLPETDYSVTLYALYEEDPSE PVTAVATTLPLPAPMRLQFPMVTHSVLRVSWVPGAVDVPGHRVTYSTNHGSDVKQMEVTG LNSVLVQNLSSLSRYLVSVQSHYPQGLSTALTSNITTLKVPSPSDLRVTNFSGSDIIVRW EAAADDVVSYLIKWISLSGGDLRQLRVSGESEGAILEGVEDDKEYQISLSALYGDGAQSE AVAIRYSTLSGGGPSSVSVSEETAVSLVISWVPPNAHVLQYRVSYTALTGAENQDSTVLV PGGEKQVVLESLQPDTRYSILVTAEYRNREGGSGSAQGKTTSLRVSSVSVVRSDHSSICL SWRPVSAVDGYRIVIQSVKDKDTKEETVDESSSSHCFTALESETLYRISVHSLLGSAEGA AVSILHPTATAPVRIPIHPRMYPIHNEVCPEVNIRNSIVTGFDMMEAFGLTQRAHSSVEG VAAEPFVFNTLPTYTVYRDVQLTQSTKFIHPAGFSPEHTISIAFRLLQETPREPFALWQL TDNDFQPMMGVVLDPTTKHLVYFSLDYRGEVQELTFDQSQVQRLFYGSFHKIHLSVSQVG VSLSVDCQRVGERPARPLGNVPTDGFEMLGKLVKTRGPNSGSAPFQLQSFEIVCNNTWAL EDTCCDLPGLRDEESCPAPAYTCTCTSDIPGAPGFPGPTGKPGPRGEKGEKGEQGHKGEM GPPGKSGFEGGLGPMGNAGPRGMAVQGKVGPPGARGEKGPPGRPGVQGLPGPPGPKGGEG VPGPKGIRGGEGSIGGPGITGPRGFQGMPGHPGPTGERGPSGLVGPIGLAGTKGERGEKG EPQSMAVIYQLVTQACEQLVHKEVLKLDKFINEISRKPAPIEEPVGPPGEPGIPGPKGPP GPRGTQGNVGSRGRPGRTGYPGEQGQRGMPGEKGALGTNVHGPPGVKGFAGLPGEAKLGS PGPKGEDGKTGPQGIPGPPGQTGEIGPPGACDSSGGCQNIPEQPEDPYYGYQP NT seq 5742 nt NT seq  +upstreamnt  +downstreamnt atggcgttccctgtccaggtcatctgcagggcagctcgcactgttggattagttctcttc tattatgtcttctctataggcatcaccttctataacaaatggctaatgaagggtttccac tatcccctcttcatgaccttagttcatcttgcgctcaacttctgcctgtcggccctgaca cgatgggccatgcagtgctggacagggaaaccccgcatcatcctgggctggacggattac atctataaagtgactcccacagccttagcaacagcactggatatcgggctttccaactgg agcttcctcttcatcaccataagcttgtacaccatgaccaaatcttcagcggtgctcttc atcctctttttctctctggtttttaaactagaggagcctaacccatacctgatcctggtg gtcctgctaatctcctccggtcttttcatgtttacattcgagtcgacacagttcaacctc gagggcttcaccatggtgctcatggcggccttcataggggggatccgctggaccctaact caggtcctcatgcagaaagcagagctgggtcttcagaacccagtagatgccatgtaccac ctccagcctgtcatgttcctctgcctctttcccctcttcctgtataatgaagcattgagc ctcagtacctcagagaagttattccgggcgtcggggccctcacctctcctccattcgctc ttcttactgagcatcggcggcgtgctggccttcggtttgggcttctcggagttcctgcta gtcgcccgaacctccagcctcactttatccatatcagggatctttaaggaggtgtgcact ctgcttttggcagcagctctgatgggagataaaatgagcatgttaaattggcttggattc gtcgtgtgcctgtgtggcatttcattacacgtgggactcaagacatattattccaaaaat aagggcccttctttaaggcagctcagcagcaaaagcccggagctcgagcttccgttactg cgacagaacggggacgaaagagaagactcgcccgccgatgacgaagatgaagagcaagaa atcactctgcacctcagtgtcctgctgctgtcaggcgtccgtggccaaggtcgccttaaa ctgacagtcctgtctgaggacagactgcagatgaaatggaaggaagctgacggacccgtt cagggctacaaggtccgagtgagacccatctcagaggtgccacagccagagctcatgctg accaccacaaggggacgggcgacggtagcaggactggactccagtcaggaatacaccctc caagtcctcgttctcaatgggaccacagagaaacttctggcaaagcggcgattcaccatg gaaagtctgcgtgaggaggagatgatccgcagcggcagccgagagcagaagaagaagatg ttgccgggcggctcggggtcgggagacttggacgatgtgacggaggctctgctgggactg cccacaatcctctacccggatcccatgacaaccaccactgctgctctcccagacgacgcc ctggagaaaacccccaaagagaagaggaagaggaagaaagacagagagcgggatcgttcc aaggcggagaacaaggaggagcagggaacgacgcagggcaagccggctgaggaaaaaccc cggaagacacccttccctacccagccggttacaggtatgtctccaaggagaccgttcata tgcgaaagcgatggagcggcggacatcatgttgctggtggacggctcctggagcatcgga cgcaccaacttcagacgggtccgagacttcttggagggtctgataacacccttccacatc gggccggacaacattcagataggtctgacccagtacagcggagacccccggacagagtgg cacctcaacaacttcaccactaaagatcagctgctggaggcagtcaggaatttcagatat aaaggcggaaacactttcacaggccaggcgctgctccacatcatggaggagaacatgagg acagagtcgggtgcaaggttagacacgccgtttttcctggtgctcttgacggacgggaaa tcgcaggatgatgccattgcggcggcaaaccggctgaagaatgctggcgtggagatcatc gctgtaggtgtgaagaatgctgatgaagcagagttgaggcaagtggcgtctgagccggtg gatctgaacgtctacaatgttaacgacttccctctactcagtaaactggtggcacgactg gtccacatcctgtgtgcgaggatagaggatcgaggcatctcaaaacggatggatcctgga ccgacagccgacccggccctctcctaccccagtccttcagacctccgcttctctgacctg ggctccagagaggtgaagctccactggaccaatcctgctaagtcggtccagcagtacaga gtggtgtaccatagcgcagagggtcagagtccacaggaggtggtggttgctggctctgag tccactgtcctactggaaggcctgtcctctcagacgctgtaccacgtgtccatcttcccc gtgtatgaacacaacgtcggcctggcactcagagggaccgtcactacattgccgctagcc atgcctgccaacctggaggtgactccttcctcttacagcacactgcgagtgagttggggt gcagcaccgggcgcaacacagtacatgatcctgtactcggcactcaaccacggagagcct gacgatgccaaagaggagaaattcagtgcagaccatacagtggtggagctagcagggtta ctgccagaaacagactactctgtcactctttatgccctctatgaggaggatcccagcgaa ccagtcactgctgttgctaccacactccccctcccagctccgatgaggcttcaattcccg atggtcacccacagtgtactgagggtaagctgggtgcccggggctgtggacgtccccggc catcgagtcacctacagcactaaccacggcagtgacgtcaagcagatggaggttacagga ctgaactcagtgctggtgcagaatctgtcctctctatccagatacctggtgtctgtccag tctcactacccacaaggcctttctacagccctcaccagtaacatcaccacactgaaggtg ccctccccatcagacctcagggtgaccaatttctcaggcagtgacatcattgtgcgctgg gaggccgcagctgatgatgttgtctcctacctcatcaagtggatctccctcagtggagga gacctgagacagttgagggtgagtggcgagagtgagggggccatcttggagggggtggag gacgataaggaataccagatctctctgtctgcgctgtatggagacggagctcagagtgaa gctgtggccatacgctacagcaccttgtccggcggaggcccgtccagcgtgtccgtctcc gaggagactgcagtcagcctcgtcatcagctgggttccccccaacgctcacgtccttcag taccgcgtctcttacactgcgctgactggagcagaaaaccaggacagcactgtgttagtt ccaggtggtgagaagcaggtggtgttagagtcattacagccagacacacgctacagcatc ctggttactgcagagtaccgcaacagagaaggaggcagcggttcagctcagggcaaaacc accagcctgagggtaagcagtgtgagcgtggtcaggtcagatcactccagtatctgtctg tcttggagaccagtgtcagctgtcgatggatatcgtattgtcatccagtctgttaaagac aaggacacaaaggaagagacagtggatgagtccagcagcagtcactgtttcaccgctctg gaatcagagaccttgtatcgcatcagcgtgcactcgcttctcggctcagcagagggtgct gccgtctccatcctgcatccaacagccacagctccagtcagaattccaatccatccccgg atgtaccctatccacaacgaagtctgtcctgaagtaaacatcagaaacagcatcgttaca gggtttgacatgatggaagcgtttggtctgactcagagagctcactcgtctgtggagggc gtggcggccgagccttttgtcttcaacacgctccccacctacactgtgtacagagacgtc caactgacgcagagcaccaagttcatccaccctgcaggtttctctccagagcacaccatc agcatcgccttccgcctgttgcaggaaacacccagggaaccgtttgccctctggcagctc actgacaatgacttccagcccatgatgggagtggtgctcgatcctactaccaagcatctg gtgtatttcagtctggactaccgaggagaggttcaggaactgacctttgaccagtcacag gtccagaggctgttctatggcagttttcacaagattcacctgtctgtcagccaggtgggc gtgtccctgtctgtggactgccagcgtgtgggtgagaggcctgctcgccctctaggtaac gtaccgaccgatggctttgagatgctggggaagctggtgaagaccagagggcctaacagt ggatctgctccgttccagctgcagtcctttgagattgtctgtaacaacacatgggcttta gaggacacctgctgtgacctgcctggactgagagatgaggagagctgtcctgccccagcg tacacctgcacctgcacctccgacatccccggagctcctggtttccccgggccaactgga aagccgggtcctcgtggtgagaaaggcgagaaaggagagcaagggcataagggggagatg ggtcctccaggaaagtctggatttgagggaggtctgggacctatgggcaacgcagggccg cgagggatggctgtgcaaggcaaagtgggtccacctggtgcaaggggggaaaagggacct cctgggcgacctggagtccagggtttaccaggacctccaggcccaaaggggggagagggg gtcccaggccctaagggcattagggggggcgaaggcagcattggaggaccgggcatcact ggacccagaggtttccaaggaatgccaggacacccagggcccacaggggagagaggaccc tcaggacttgtgggacctataggtctagcagggactaaaggggaacgaggagagaagggg gaacctcagtccatggccgtgatctaccagctggtcacacaggcctgtgaacaactcgta cataaggaggtgttgaagctggacaagttcattaatgagataagtcgtaagccagctcct attgaggagccggtggggcccccaggggaacctggtataccagggcccaagggtccacca ggccccaggggcacccaaggcaatgtcggctcaagagggagacctggcaggactggatat ccaggagagcagggacagagagggatgccaggggagaaaggtgctttgggcaccaatgtc catggccccccaggggtcaaaggatttgcaggtcttccaggtgaggccaaactgggaagc ccaggtcccaaaggagaagatggtaaaacaggaccgcaagggatcccgggacctcctggc cagacgggtgagatcggacccccgggtgcgtgtgacagcagtggaggctgtcagaacatt cccgagcaaccagaagacccatattacggctaccagccttga

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