Scomber japonicus (chub mackerel): 128357200
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Entry
128357200 CDS
T09718
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
128357200 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128357200 (xpc)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
128357200 (xpc)
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GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
128357200
NCBI-ProteinID:
XP_053173440
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Position
4:11829845..11842636
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AA seq
829 aa
AA seq
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MVTSPPPKVKMTAKKPEKEEEEEDSEEDEDDWEEVEELAEPLGPVEPAEPVLPSHPVEIE
IESPEVRKKQKRQAEFEAYLRRMMNRFKKDVLVDTHKVHLMCLIASGMFRNRLCSEPDLL
AITLSLLPAHFAAVAKERIDQNYLSGLLKWFRATFTLNPSLTYEERPDPRVLLERRLASV
SARNHQEMTHLFLLVLRSLQLFCRLVLSLQPIPLKPPSIKGKGAKTSPGASGKNQGASKA
SPPEPKVSPGTKRPAGGGKTKGDRGGKKAKRKEIKEEEEEEAAATYGRQKPKNSKRRSVA
SKVSYKEESENEKEDEGLSDEEDFQLTSEDDSDDFEDGAGFTKASKGKGSSKAKSTTASK
RKSGGGKNQVKDEEDKECEEEDDDDDDEEEGTKTNRTNRRGGKRREGPGTDEWLEVFVEK
TSSWVCIDVEHGVAMPQLCSKNATAPVTYVVAVDGDGFVKDLGRKYDPTWMTSSRKRRVE
EEWWEETLVPFLGPEDERDVKEDKEIEKRLLNKPLPISVAEYKNHPLYALKRHLLKYEAI
YPPTATILGYCRGEPVYSRDCVHTLHSRDTWLKEAQTVRLGEEPYKMVRGFSNRSRKARM
MSEMKDQNDLALFGEWQTEQYQPPIAVDGKVPRNDYGNVYLFKPCMLPVGCVHVRLPNLN
RVARKLDMDAAPAVTGFDFHGGYSHAVTDGYIVCEEHEEVLRAAWLEEQELQKQKEREKR
EKRAISNWTLLVKGLLIRERLKQRYGKKNLDPVSLAHTQDGGDENGGLSSDEEVIEGGGS
VAMTASETLAMSWPQNRQTEEDSGSVSGLKRTKRGKKGQEKHLFPFEKV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggtgacttcaccaccacctaaggtcaagatgactgcaaagaaaccagagaaggaggaa
gaggaggaggacagtgaggaagacgaggatgattgggaggaagtggaagagctggctgag
cctctgggtccagttgagccagcagaacctgtcctgccctctcatccagtagagattgag
atcgagtctccagaagtcaggaaaaagcagaagaggcaggctgagtttgaggcatatctg
aggcgaatgatgaaccgattcaagaaggacgtgctggtggacacacacaaggtccacctg
atgtgcctgatagccagtgggatgttccgcaaccgtctgtgcagtgaaccagacctgctg
gccatcactctgtcactgctgccggcccactttgccgcagtggccaaggaacgcattgac
caaaattacctctctggactgctcaaatggtttagagcaacattcaccctcaaccccagc
cttacctatgaggagcgtccggacccacgggttctgctggaaaggaggttggccagcgtc
tcggcgagaaaccaccaggagatgactcatctgttcttattggtcctgaggtctttgcag
ctcttctgccggttggtcctttccctgcagccaattcctctcaaacctccatcaatcaag
ggcaaaggggctaaaacatctcccggtgcctcaggaaagaaccagggggcatccaaggcc
agcccaccggaaccaaaagtctctcccggcaccaagagaccagctggaggcgggaagacc
aagggagacagaggaggaaagaaagctaagaggaaagaaataaaagaggaggaagaggag
gaggcggctgcaacgtatggccgtcaaaagccaaagaactcaaaacgtcggagtgtcgcc
tcaaaggtcagctataaggaagagagtgaaaatgaaaaggaggatgaggggctcagtgat
gaggaggattttcagctgaccagtgaggacgacagcgatgattttgaggacggggccgga
ttcacaaaggcgtcgaaggggaaagggagcagcaaagccaagagcaccacagcctcaaag
agaaagagcggcggagggaaaaaccaggtgaaagatgaagaggataaagagtgtgaagaa
gaagatgacgatgatgatgatgaagaagaaggaacgaagaccaaccgaacaaatcgaagg
ggcgggaaaaggagagaggggcctggaacagatgagtggttggaggtgtttgtggaaaaa
acgtcctcctgggtttgcatagacgtggagcacggtgtagccatgcctcaactctgctcc
aagaatgcaacagcaccggtgacgtacgtggtggcagtggacggggatggtttcgtgaag
gacctggggagaaaatatgaccccacctggatgacttcgtccaggaagagaagggtggaa
gaagagtggtgggaggaaacgcttgtgccgttcctgggaccggaggacgagagggatgtg
aaggaggacaaggagattgagaaaaggctgctgaacaaacccctgcccatctctgtggcg
gagtataaaaaccacccactgtacgccttaaagagacacctgctgaaatacgaagccatc
taccccccaacagccactatactgggatactgccgaggagagccagtgtactccagggat
tgtgtgcacactctccactccagagacacatggctgaaagaagcacaaactgtccgatta
ggagaagagccatacaagatggtgaggggcttctctaatcgttcccgtaaggccaggatg
atgtctgagatgaaggaccagaatgacctggctctgtttggagaatggcaaactgaacag
taccaaccgcctatagctgtggatggaaaggttccccgtaacgactatggtaacgtctac
ctgttcaagccctgtatgttaccggtgggctgtgtccatgtcaggctgcccaacctgaac
cgtgtggccaggaagttggacatggacgccgcgcccgcagtcacaggctttgacttccat
ggaggatactcacacgctgtcacggatggttacattgtgtgtgaggagcatgaggaggtg
ctcagagcggcctggttggaagaacaagagcttcagaaacaaaaggagagagagaaaaga
gaaaagagagctatctccaactggactctgcttgtgaaggggctcctgatcagagaaagg
cttaaacagcgttacggcaagaagaacctggatcccgtgagtctcgctcacactcaagac
ggtggagacgagaatggtggactttcctctgatgaggaggtgattgagggtggaggttct
gtagctatgacggcatctgaaactctggcaatgtcctggccccaaaacagacaaacagag
gaggacagtgggagcgtcagtgggttgaagaggactaaacgagggaagaaagggcaagag
aaacatttgttcccctttgagaaagtgtga
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