Scomber japonicus (chub mackerel): 128357317
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Entry
128357317 CDS
T09718
Symbol
rarga
Name
(RefSeq) retinoic acid receptor gamma-A
KO
K08529
retinoic acid receptor gamma
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128357317 (rarga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sjo03310
]
128357317 (rarga)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128357317 (rarga)
Nuclear receptors [BR:
sjo03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
128357317 (rarga)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PRIMA1
Motif
Other DBs
NCBI-GeneID:
128357317
NCBI-ProteinID:
XP_053173618
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Position
4:17924501..17941980
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AA seq
501 aa
AA seq
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MFDCMEALGMGPRQLYDVTSRGACMLRKASPFFAGLDPFAWTGSASVQSVETQSTSSEEM
VPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQ
INKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKEEVVLPESYELSGELEELVNK
VSKAHQETFPSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFT
TLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF
AFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQKVDKLQEPLLEALKIYARRRRPNK
PHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFEDQPESNDSP
PPPPPPPPPPPALVLKQEAEDEDDSWATENGSEPSPEEEDEDDDDDVGDEERDRGSDSDG
ESWGVLDAIDGPRKGLVGRAQ
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgttcgactgtatggaggctctgggaatgggcccccgtcagctctatgatgtcaccagc
cgtggtgcgtgcatgctgcggaaggcaagccccttctttgctgggctggaccccttcgct
tggacaggcagtgccagcgttcagtcggtggagacccagagcaccagctcagaggagatg
gtacccagttctccatctccacctccaccacctcgggtctacaagccctgctttgtgtgc
caggacaagtcctcagggtaccactatggggtcagctcctgtgagggctgcaagggtttc
ttccgccgcagtatccagaagaacatggtgtacacctgccacagagacaagaactgtcaa
attaacaaggtcacacgcaaccgctgccagtactgcaggctgcagaagtgctttgaggtc
ggcatgtccaaggaagcggtgcgtaatgacagaaacaagaagaagaaagatgtgaaggag
gaggtggtgcttccagagagctatgagctaagtggagagctagaagaactggtcaataaa
gtcagcaaagctcaccaagaaaccttcccgtcattgtgccaactgggcaaatacaccacc
aactccagctcagaccaccgtgttcagctggatctgggtctatgggacaagttcagtgag
ctctccaccaaatgcatcatcaagattgtggaattcgccaagcggctgccgggttttacc
accctcaccattgctgaccagatcactctacttaagtcagcctgcctggacatactgatg
ctgcggatctgcacacgctacactccagaacaggacactatgaccttctcagatggactg
actctgaaccggactcagatgcacaatgctggtttcggtcccctcacagacctggttttt
gcctttgctggccaacttctacccttagagatggacgacacagaaaccggcctcctcagt
gccatctgcctcatctgtggagaccgcatggatctcgaggagccccagaaagtagataag
ctgcaggagcctctactcgaggctttaaagatctacgcccgccgccgccgccccaacaaa
ccccacatgttcccccgcatgctcatgaagatcaccgacctcaggggcatcagcaccaag
ggcgcggagagagccatcactctgaagatggagatcccagggccaatgcctcctttgatc
agggaaatgcttgagaatccagaggcctttgaagaccagccagagtccaatgacagccca
ccgcctccaccaccaccaccacctccaccgccagcccttgtcctgaagcaggaggctgag
gatgaggatgatagctgggccacagagaacggcagtgagccatcgccggaggaagaggac
gaggacgacgatgatgatgtgggggatgaagagcgagacaggggctcggacagtgatggg
gagtcctggggggttctcgatgccatagatggcccgagaaaaggccttgtcgggagggca
cagtga
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