Scomber japonicus (chub mackerel): 128357451
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Entry
128357451 CDS
T09718
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04110
Cell cycle
sjo04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128357451 (smc1a)
04114 Oocyte meiosis
128357451 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sjo03036
]
128357451 (smc1a)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
128357451 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
128357451 (smc1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128357451
NCBI-ProteinID:
XP_053173779
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All DBs
Position
4:17211918..17222250
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AA seq
1231 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYQEDNGEERNFTRIIIGSSSEYRINSKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNETEIEKLNK
ELGQRNKEIDKDRKKMDHVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAARKSLQNAQKMYKKRKGDMDELDKEMKAVELAKQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEEELTEEVEMAKRRIDEINMELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREREITDLRDRMNLVEDEVFVEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQVDYEKNQLKEDQEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHEMEEIRKKLGG
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLRSGTMDDISQGEGSSQSE
ESSSQRTSSSVLAKEALIEIDYSNLSEDLKDALSEEEIKAETNTLQQRLNEQQSILQRIS
APNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNTCFESVATNI
DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALL
FAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSLI
GVYPEQGDCVISKVLTFDLSQYPDANPNPNE
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggttacttaaaactgatagagattgaaaacttcaagtcgtataaaggaaggcagatc
attggaccttttcacaagttcacggcaattatcggacccaatggatctggaaagtccaat
cttatggatgccatcagttttgtgttggcggagaagactagtaacctacgtgtgaagaca
ttgaaggatctgatccatggagcgcctgtagggaagccagctgctaacagggcttttgtc
agtatggtgtaccaggaggataacggagaggagcgcaacttcacaaggatcatcattggt
tcctcctctgagtaccgcatcaacagcaaggtggtgggcctgcctgaatacagcgaagag
ctggaaaaacttggcattctcatcaaggcccggaacttcctggttttccagggagctgtg
gagtccattgccatgaagaaccccaaagaacgtacagctctgtttgaggagatctcacgt
tctggagaactggcccaggagtatgaccgtagaaagaaggagatggtgaaagcagaagag
gacacacaattcaattaccaccgcaagaaaaacattgctgctgagcgcaaagaagccaag
caagagaaagaggaggctgagcgataccagcgtctgaaggatgaagtggccagagccagt
gtacagttgcagctcttcaagctataccacaatgagactgagattgagaagctgaataaa
gagctgggccagcggaacaaggagattgacaaggaccgtaaaaagatggaccatgtggag
gaggagctgaaggacaagaagaaggagctgggcaggctgatgagggagcagcagaccatt
gaaaaagagatcaaagagaaggattctgagttgaaccaaaagaggccgcagtacatcaag
gcaaaagagaacacctcacacaagatcaagaagcttgaggcagcacgtaaatcattgcag
aatgcccaaaagatgtacaagaaacgcaagggtgacatggatgagttagataaagagatg
aaagcagtggagttggctaagcaagaatttgaagagcgcatggaggaggaggcacagagc
cagggccaggacctcaccctggaggaaaatcaggtcaagcagtaccatcgtctcaaggaa
gaggccagtaaacgtgcagccacgttggcacaggaactggagaagttcaaccgtgaccag
aaggccgaccaggatcgcctggacttggaggagaggaagaaagtggagacagaggccaaa
atcaaacagaagattcgtgaaattgaggagaaccagaagcgtattgagaaattggaggat
tacatcaccaccagcaggcagtctctagatgagcagaaacgcatggaggaggagctgacc
gaagaggtggagatggccaagaggagaattgatgagatcaacatggagcttaaccaggta
atggagcagctgggcgacgccaggatcgataggcaggagaacagtcgccagcaacgcaag
gctgagatcatggagagcattaaaagactctaccctggctctgtgtatggtcgtctaatt
gacctgtgccagcccactcagaagaagtatcagatcgctgtgaccaaagtgttgggcaag
aacatggacgccatcattgttgactctgagaagactggcagagactgtattcaatacatc
aaggagcagagaggagagcctgagacgtttcttcctcttgactacctagaggtcaaacca
acagatgagaaactgagagaactgcggggagccaagctggtgattgatgtgattcgctat
gagccccctcacatcaagaaagccctccagtatgcatgtggcaacgctctggtctgtgag
aatgtagaagatgcacgaagaattgcttttggagggccatacaggcacaagactgtagcc
ctggacggtactctgttccagaagtctggagtcatctctggaggagccagtgacctgaag
gccaaggccaggcgttgggacgagaaagctgtggacaagctcaaggagaagaaagaaaaa
ctcactgaagagctcaaggagcaaatgaaagccaaaaggaaggaggcagagctgcgtcag
gtgcagtctcaggcacacggtctacagatgagactgaagtactcccagagtgacctggaa
cagacaaaaactcgccacctctccctcaacatgcaggagaagtctaagttggagagtgaa
ctggcaaactttggtcctcgcatcaatgacatcaagagaatcatccagtcccgtgagagg
gaaatcactgaccttcgggaccgcatgaacctggtggaggatgaagtgtttgtggagttt
tgtaaggagattggagtgaggaacatcagagagtttgaggaggagaaggtgaagaggcag
aatgaaattgcaaagaagcgtcttgagtttgagacccagaagacccgtctgggtatccag
gtagactatgagaagaaccagttgaaggaggaccaagagaaggtcatgatgtgggagcag
accgtcaagaaggacgaggctgaaatagagcgactcaagaaggaggagcacaggcatatg
aagatcattgacgagacaatggcccaacttcaggacctgaagaaccagcacctcacaaag
aaatctgaagtcaatgataagaaccatgagatggaggagatccgcaaaaaactgggtggc
gctaacaaagagttgactcagctccagaaggaggtgacagccattgagaccaaactggag
cagaagcgcagtgaccgtcacaacctgctgcaagcctgcaaaatgcaggatatcagactg
cctctgcgctctggaacaatggatgatatcagccagggagaggggagttcacagtcagag
gagtccagcagccagaggacatccagcagtgttctggctaaagaggctctcatagagatc
gactacagcaacctgtctgaagaccttaaggatgcgctgtcagaggaggagatcaaggca
gagacaaacacactgcagcagcgtctgaatgagcagcaaagcatccttcagaggatcagt
gcgcctaacatgaaggccatggagaagcttgagagtgtcagggacaagttccaagagacc
agtgatgaatttgaggctgctcgtaagagagcgaagaaagccaagcaagcctttgagcaa
atcaagaaggaaaggtttgatcgtttcaatacctgctttgagtctgtggccaccaacatt
gatgagatctacaaggcactctcacgtaacagcagtgcccaggctttcctgggaccagaa
aacccagaggagccctacctggatggcatcaactataactgtgtggctccagggaagaga
ttcagacccatggataacctgtctggaggagagaagactgtcgctgccctggctttgctc
tttgctattcacagctacaaaccagctcccttcttcgtcctggatgagattgacgctgct
ctggacaacactaacattggcaaggtggccaattacatcaaagaccagtctgtgcagaac
ttccaggccatcgtcatttctctgaaggaggaattctacacaaaggcagactcactcatc
ggtgtttatccagagcaaggagactgcgtcatcagcaaagtgctcacatttgatctctct
cagtatcctgatgccaatcccaatcccaatgaatag
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