Scomber japonicus (chub mackerel): 128357468
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Entry
128357468 CDS
T09718
Symbol
abcd1
Name
(RefSeq) ATP-binding cassette sub-family D member 1
KO
K05675
ATP-binding cassette, subfamily D (ALD), member 1 [EC:
7.6.2.4
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo02010
ABC transporters
sjo04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
128357468 (abcd1)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
128357468 (abcd1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sjo02000
]
128357468 (abcd1)
Enzymes [BR:
sjo01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.4 ABC-type fatty-acyl-CoA transporter
128357468 (abcd1)
Transporters [BR:
sjo02000
]
ABC transporters, eukaryotic type
ABCD (ALD) subfamily
ABCD1 subgroup
128357468 (abcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane_2
ABC_tran
DUF4611
AAA_21
AAA_23
AAA_29
SMC_N
Adeno_IVa2
AAA_15
ORC-CDC6-like
AAA_28
Rad17
AAA_5
AAA_16
NACHT
AAA_7
Motif
Other DBs
NCBI-GeneID:
128357468
NCBI-ProteinID:
XP_053173797
LinkDB
All DBs
Position
4:complement(30994606..31017085)
Genome browser
AA seq
766 aa
AA seq
DB search
MQLTYEKLPAQLRRNSRLKRLAAVLLAAYAIKKLTPHVWRRIVKRSAAGKQLVGANLPKD
VATSSSSTDNHKEKKKSGSRSPSVNRDFALRLSRLLKLLFPRLLCREVGLLALHSLTLMS
RTFLSIYVATLDGAIVKSIVQKDPRAFVLQLSKWLLVAVPATFINSAIRFLEGQLTLSFR
SRLVNHAYELYFTNQTYYRVSNMDGRLSNPDQSLTEDIVMFSASIAHLYSNLTKPILDVV
VTCYTLLRTAHSKGANTTWPSVIAGLAVAFTAKILRSCSPRFGKLVAEEARRKGELRYMH
SRIITNSEEIAFYGGHKVEMAQLQRSYKSLSSQIHQILLKRLWYVMLEQFLMKYVWSASG
LVMVAVPIITATGYSKYDSEEVKQAAMVMKEEELVSERTQAFTTARNLLNAAADAVERIM
SSYKEVTELAGYTSRVSEMLDVFEDVNKGVYRRSADREEAIAAAAAAAGGETGVIQHGQR
VCGRLEIRGQVISVEKGIRCENLPIITPTGDVVVSSLNIQVDEGMNVLITGPNGCGKSSL
FRILSGLWPVYGGVLFRPEPQHMFYIPQRPYMSEGTLRDQVIYPDSVEEMIQKGMRDSDL
EEILRTVHLLYILDREEGWESVSDWKDVLSGGEKQRMGMARMFYHRPRYALLDECTSAVS
IDVEGSIFQAAKDAGIALLSITHRPSLWKYHSHLLQFDGEGGWRFERLDASTRLSLQEEK
QRLENQLSGIPKMQQRLAELCLLLGEREGEREEEEEEEEKEEEEDK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgacctacgagaagctgccggctcagctgaggcggaactcccggctcaagagg
ctggcggccgtgctgctcgccgcctacgccatcaaaaaactcacgccgcacgtctggagg
agaatcgtcaagaggagtgcagccggtaaacagctggtcggagctaacctccccaaggat
gtggccacctcctcctccagcactgataaccacaaagagaagaagaagagtggcagcagg
tctccatcagtgaacagggattttgccctcagactgtctcgcctgttgaagctcttgttt
ccacggttactatgtcgagaggtcggactgctcgccttgcactctctcactctgatgtcc
agaacttttctgtccatttacgtcgccacactggacggtgcgattgtgaagagtatcgtc
cagaaggatcctcgagcctttgtgctccagctgtctaagtggctcctcgtcgccgttcct
gccacttttatcaacagtgccatcagattcctcgaaggtcagctgacactcagcttcagg
agccgattggtcaaccacgcctacgagctgtacttcaccaaccagacgtactaccgcgtc
agtaacatggacggccgtctgtccaatcccgatcagtctctcactgaggacatcgtcatg
ttttcagcctccatcgctcatctttactccaacctgaccaaacccatcctggacgtagtc
gtcacctgctacaccttgctgcgcaccgcccactccaaaggagccaacactacttggccg
tcggtcattgccggcctggcggttgcattcactgccaaaatcctgcgctcctgctcgcct
agattcgggaagctcgtggctgaagaggcacgacggaaaggagagctgaggtacatgcat
tcccgtatcatcaccaactcagaggagatcgcattctatggaggacacaaggtggagatg
gcccagctgcagaggagctacaagtctctgtcctctcagattcatcagatcctgctgaag
cggctctggtacgtcatgctggagcagttcctcatgaagtacgtatggagcgcctcaggt
ctggtgatggtcgccgtgcccattatcaccgccacaggatactccaaatatgactctgag
gaggtgaagcaggcagccatggtgatgaaggaggaggagctggtgagcgagaggacgcag
gccttcaccacagccagaaacctgctgaatgctgcagccgacgccgtggagagaatcatg
agttcctacaaggaggtaacagagttggcgggttacacatctcgagtctctgagatgctg
gatgtgtttgaagacgtgaataagggagtctaccgtcgctctgcagacagagaggaggcg
atagcagcagcagcagcagcagcaggaggagagacaggagtcatccagcacgggcagagg
gtctgtggccgtctggagatcagaggtcaggtgatcagtgtagagaaggggattcgctgt
gagaacctgccaatcatcacaccgacaggagacgtggtggtatccagcctcaatatccag
gtggacgaggggatgaatgttttgatcacaggtccaaacggttgtgggaagagttctttg
ttcaggatcctcagcggattatggcctgtttatggaggagtgctgttccgtccagaacca
cagcacatgttctacatcccacagaggccctacatgtcagaggggaccctcagagaccag
gtgatctatccggactcagtagaggagatgattcagaaaggaatgagagattcagaccta
gaagagatccttcgcacagtccacctgctctacatcctggacagagaagaaggttgggag
tcagtcagtgactggaaggatgttctgtctggaggagagaaacagaggatggggatggct
cgtatgttctaccatcgccccaggtacgctctgttggatgaatgtacgagtgctgtcagc
atcgacgtggagggaagcatcttccaggctgcaaaggatgctgggatagccctgctgtcg
atcacacacagaccctccctttggaagtaccactctcacctcctgcagtttgatggagaa
ggtggttggcgttttgaacgtctggatgcgtccactcgtctgtctctgcaggaggagaaa
cagcgcctggagaatcagctgtcggggatcccaaagatgcagcagcgtctggcagagctg
tgtctcctcctgggggagagagagggggagagagaggaggaggaggaggaggaggagaag
gaggaggaggaggacaaatga
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