Scomber japonicus (chub mackerel): 128357535
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Entry
128357535 CDS
T09718
Symbol
sort1b
Name
(RefSeq) sortilin 1b
KO
K12388
sortilin
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
128357535 (sort1b)
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
Motif
Other DBs
NCBI-GeneID:
128357535
NCBI-ProteinID:
XP_053173873
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Position
4:16075527..16090222
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AA seq
823 aa
AA seq
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MGLLLPCYLLLSILTFAAGLDFERGSKSSGQPVFVRDSNTVERAAKIVKRSLPAWLAAPP
NHKIKRRSTEQGDSCQAMQGFDKKLADNTHSYTFNDLSGSVSLAWVGDGTGVILALTTFQ
VPFFMIRLGQSKLYRSENYGKSFQDVTSLINNTFIRSEFGIAIGPENSGKVILTGEVSGT
LGSRIFVSTDFGKTFSHLDLPFVPMMQITYNPENSNALLVLSNNNELWVSDDFGSTWKKI
HNMVCLVKWGRKNTIFFTSNLNGSCTDRGVLELRRTTDYGKTVKTVASKIYSFGLGGRFL
FASVMTGKGTLRMIHVSVDQGETWNMAQLPPVGHEQFYSILAANDDMVFMHVDEPGDTGF
GTIYASDDRGTVYSKSLERHLYTTTGGDTDFTNVTSLRGVFITSILAEDSSVQSVVSFDQ
GGEWVPLRKPANSKCDATAKDPDKCSLHIHAAYSTAMRLNVPMLPLSEPNAVGLIIAHGS
VGDAISMMRPDVYVSDDGGYSWIKALDGPHHYAILDSGGLLVAVEHSTTQPINKIRFSTD
EGQCWGTYTFTKEPIYFTGLASEPGARSMNVSIWGYRDSFLSQYWISITIDFRELLTRDC
DDKDYVQWLAHSDDISDPNDGCMLGYKERFLRLRKDSVCYNGRDYVVNTQPTKCACTLDD
FLCDFGYYRKENSSECVEQPDLKGKVLEFCLHGKEEQLQTSGYRKIPGDKCEGGQMPERK
EIDLSKRCVSDLLGPELLVDSRTSKSVPIVITVIIIMLLSTAAGVVFVKKYVCGGRFLVH
RYSVLQQHVEDNAAEGMDDPLETNHTQNGKIEFHDDSDEDLLE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgggacttctgctgccttgttatctgctgttatctattttaactttcgcggccggttta
gatttcgagcgcggatccaaatcctccggacagccggtttttgtgagggattcaaacaca
gtcgagagagctgcgaaaatcgtcaagaggtctttgcctgcatggctggctgcaccacca
aaccacaagataaaacgaagaagcaccgagcagggcgactcctgccaagctatgcaaggc
ttcgacaagaagttagctgacaacacccacagttataccttcaatgacctgagtggatcg
gtgtcactggcctgggttggagatggcacaggggtcatcctggctttgacaacttttcag
gtccctttcttcatgataagacttgggcagtctaaactctatcgaagtgagaactacggg
aagtccttccaggatgtgaccagcctcataaacaacaccttcatcagatcagagtttggc
atcgccatcggccctgagaactctggcaaagtgatcctgacaggtgaagtgtctggaact
cttgggtctcgaatctttgtttccactgactttggaaagactttcagccacctggacctg
cccttcgtccccatgatgcagatcacatacaaccctgagaattccaatgcactgctggtc
ctcagcaacaataatgaactgtgggtgtctgacgattttggcagcacctggaaaaagatc
cacaacatggtgtgtctggtgaaatgggggaggaaaaatacaatcttcttcacatccaac
ctcaatggatcctgcactgaccgaggggtactggaactgaggaggacgactgattacgga
aaaactgtcaagactgttgcaagtaaaatctactcctttggcctaggcggacgcttcctc
tttgcctctgtaatgacaggcaagggcactctgaggatgatccacgtgtcagtagaccag
ggtgagacttggaacatggctcagttgccccctgtcggtcacgagcagttctactccatc
ctggcagcgaacgatgatatggtcttcatgcacgtcgatgagccaggagatacaggattt
ggtaccatttatgcatcagatgaccgtggcactgtgtactcaaagtcactggagcgtcac
ctttacacgaccacagggggcgatacagacttcactaacgtcacctctttgcgaggagtt
ttcatcaccagtatcctggctgaagacagctcggtgcagtctgtggtgtcctttgatcag
ggaggggaatgggttcccctgcggaaacctgccaacagcaagtgtgacgctacagccaaa
gacccagacaagtgcagtctccacatccacgcagcctacagtactgctatgaggctgaat
gtccccatgctgcctctgagtgaaccaaatgctgtgggtctcatcatagctcatgggagt
gttggtgatgccatctcaatgatgaggcctgatgtgtatgtgtctgatgatggggggtac
tcctggataaaggcccttgatggaccccatcactatgctattctggactctggagggctg
ctggtggctgtggagcacagcaccactcaacctatcaacaaaatcagattctctactgat
gagggacagtgctggggtacgtataccttcaccaaagaacccatctacttcactggtctg
gcatcagaaccgggagctcgctccatgaacgtcagtatctggggttacagagattctttc
ctcagccagtactggatctctatcaccattgactttagggagctcctcaccagagactgc
gatgacaaggactatgtacagtggttggcccactctgatgacatcagtgaccccaatgat
ggttgcatgctgggctacaaagagaggttcctgcgtctcaggaaggactctgtatgctat
aacgggcgcgattacgtggtcaacacccagccaaccaagtgtgcgtgcacccttgatgac
ttcctgtgcgactttggatattaccgtaaagagaacagctcagagtgtgtggagcagcca
gatctgaagggcaaagtgttggagttctgtttgcatggaaaagaggagcagctgcagact
agtggctacaggaaaatccctggagataaatgtgaaggaggacagatgcctgagcgtaaa
gagatcgacctcagtaagaggtgcgtgagtgacctgctgggcccagaactcctggtagac
agtcgcacctccaagtctgtacccattgtgataacggtcatcattatcatgctgctgagc
actgcagcaggagttgtcttcgtcaagaaatatgtctgcggtggcaggttcttggttcac
aggtactctgtgctgcagcagcatgttgaggacaatgccgctgaggggatggatgatccg
ctggagaccaaccacactcaaaacggcaagatagagtttcatgacgactcagatgaggac
ctgctcgaatag
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