Scomber japonicus (chub mackerel): 128357696
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Entry
128357696 CDS
T09718
Symbol
pcdh17
Name
(RefSeq) protocadherin-17
KO
K16499
protocadherin delta 2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128357696 (pcdh17)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128357696 (pcdh17)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
128357696
NCBI-ProteinID:
XP_053174044
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Position
1:26808573..26866458
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AA seq
1141 aa
AA seq
DB search
MYLSIFFFLLLWAQALTLKNLNYSVPEEQGPGTVIGNIAKDARLGLEQTGQGGQGKKANF
RVLENSAPHLIDVDPQSGLLYTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDIQD
INDNSPIFPSDQIDIDISENAVPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLEVK
SRGDGTKFPELVIQRPLDREERSHHTLILSATDGGEYPRSGTMQINVKVIDSNDNSPVFD
QPSYVVEIPENSPPGKVLIDLNATDPDEGNNGQVVYSFSGYAPERIRELFSIDSRTGVIK
IQGEIDYEESPVIEIDVQAKDLGPNPIPGHCKVTVKVLDRNDNWPSIGFVSVRQGAISEA
APPGTVIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREAQDEYN
VTIVAKDNGIPPLNSTKSFTVKILDENDNVPRFTKSVYLLQIHENNIPGEYLGSVLAHDP
DLGQNGTVYYSIINSNVSGGDVNTYVNVNAANGAIYAVRSFNYEQIKYFDFKVLAKDAGS
PHLESNATVRISVLDVNDNIPVIVLPLLQNDTAEIHVPRNVGVGYIVTTVRAVDNDYGES
GRLTYEISDGNEEHLFEIDPVTGEVRTAHPFWDNVSPIVELIIRVSDHGKPTLTAAARLI
VKASNGHTVDGLLHVDDNQNWDMSLPLIVTLSIISIMLLAAMVTIAIKCKRENKEIRTYN
CRIAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTR
LPLSSPRSEVMYLKPTANNLSVPQGHVGCHTSFTGPVTSTTDTPTNRMSIIQTDNFPNEP
NYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKLKAT
GVKPPPLEQDEDCVNCTEECRVLGHSDRCWMPQFPAGGNQAEGVDYRNNMFVPAGMESVP
ETETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASSSPTKG
CSSMSPCSSVKSPADGAEGKPPPATCSGHYGPPDGQYLSPTKQTRDQGVYPPLPPSDPVA
KVLAEARSRISQETTGEMECVLEQVDPEANRDGMDADQVVRDIDKLLQDCRGSEATGTLR
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttctattttctttttcctcctcttatgggctcaagccctgacattaaaaaac
ttgaattactctgtcccggaggaacagggtccagggacagtgattgggaacattgccaaa
gatgccagacttggactggaacagactgggcagggaggacagggtaagaaagccaacttc
agggtgttggagaactcagccccgcatcttatcgacgtggacccacagagtggactgctg
tacacaaagcagcgcattgacagggaaacattgtgtaagagaaaccccaagtgccagctc
tccatggaggtgtttgccaatgacaaggagatctgcatgatcaaaatagatattcaggac
attaacgacaactcacccatcttcccctcagatcagattgatattgacatttctgaaaac
gcagtgccagggacacggtttcccctgaccagcgcgcatgacccagatgcaggggaaaat
ggcctgaaaacgtatcaaataacacgcgacgactacaatctcttttccttggaggtaaaa
tcccgtggggacgggactaaattccctgaattagttattcaacgaccattagacagagaa
gaaagaagccatcacactcttattttgtcagctactgatggtggggaatatcctaggtca
ggtaccatgcagataaatgttaaagttatcgattccaatgataacagtcccgtgtttgat
cagccctcatacgttgtcgaaattccagaaaattcacctcctggcaaagtcctgatcgat
ttaaatgccactgatcctgatgagggcaacaatggacaagtagtctattcttttagtggc
tatgccccagagagaatccgggagctcttctccatagattccagaacaggggtcataaag
attcagggggaaattgactatgaagagagcccagttatagagattgacgttcaggcaaag
gatctaggtcccaatccaatcccaggccattgtaaagtcactgttaaagtgcttgacagg
aatgataactggccgtctataggctttgtgtctgtgagacagggagccatcagcgaggca
gcacctccaggcactgtgattgctctggtccgtgtcacagacaaggactcaggcaggaat
gggcagcttcagtgcagagtgctgggtaatgtcccgtttaaacttgaggaaaactatgat
aacttctacacagtggtgacagacaggcccttggacagagaggcgcaggatgagtataat
gtcaccattgtggccaaagacaatggcattccccctctaaactccactaaatccttcact
gtaaagattctggatgagaatgacaacgttcctcgctttaccaagtccgtttaccttctt
cagatacatgagaacaacatcccaggggagtacttaggttcagttctggcccatgatcca
gacctcggacagaatggcactgtgtactacagtataatcaactctaatgtgagtgggggt
gatgtcaacacctatgttaatgtgaatgcggccaatggagctatatatgcagttagatcc
ttcaactatgagcaaataaaatattttgacttcaaggttcttgctaaagatgctggatct
ccacatctggagagcaacgctactgtgcgcatcagtgttctggatgtcaatgacaacatc
cctgtcatagtgctgcccctgctccaaaatgacactgctgaaatccatgttccgcgtaat
gttggtgttggttacattgtcaccacagtgagggcagtggataatgattatggcgaaagt
gggaggctcacctatgagatctcagatggcaatgaggagcatctttttgagattgatcca
gtgactggggaggtgcgaacagctcacccattctgggacaatgtcagcccaattgtggag
ctgatcatacgagtgtcggaccatgggaagccaacactcactgctgccgccaggcttatt
gtcaaggcctccaatggacatactgtcgatggactgctacatgtggacgacaatcagaac
tgggacatgtccctgcctctcattgtaactctcagcataatatccatcatgcttttggct
gccatggtgactatagcaatcaagtgcaagcgggaaaataaggagatccgtacctacaat
tgtcgcattgcagaatactcgcaccctcagctggggaaaggcaagaagaagaagattaac
aagaacgacatcatgctggtgcagagcgaggtggaggagcgggatgccatgaatgtaatg
aatgtggtaagcagtccttccttggccacctctcccatgtactttgactaccagacacgc
ctgccactcagctcaccaaggtcagaggtcatgtacctcaagcccactgccaataacctc
agcgtgccccaaggccacgtgggatgccacaccagcttcacaggcccagtcaccagcact
acagacacccctactaaccgcatgtccatcatacagactgacaatttccccaacgagcct
aattatatgggtagcagacaacagtttgttcaaagtagttcgacattcaaagacccagag
cgagcaagcctcagagacagtggtcatggtgacagtgaccaggctgacagtgaccaggac
accaacaaaggttcctgctgtgatatgtctgcaaaggaagccctcaagttaaaggctaca
ggcgttaaaccaccacctttggagcaagatgaggattgcgtgaattgtacagaggagtgc
agagtactgggtcactctgaccgctgctggatgccccaattcccagctggaggaaaccag
gcagagggtgtcgactaccgcaacaacatgttcgtgccagcaggaatggaatccgtgcct
gagacagagacctacgagacagtcaaccccaacggcaagaagacgttctgtacatttggc
aaagagcggcgtgaccacaccatactggttgccaacgtgaagccctacttgaaggcgaaa
cgtgccctcagcccactgctccaagaggtaccctcagcgtcaagcagtcctaccaagggc
tgctccagcatgtctccttgctcctcagtcaaaagcccagctgatggggctgaaggcaaa
cctcctcctgccacctgctccggtcactatgggcctcctgatggtcaatacctgtcacca
accaaacaaaccagggaccagggggtctacccacccttgcctccatcagacccagtggcc
aaggtgctcgccgaggcccgctccaggatcagccaagagacaacaggtgaaatggagtgt
gtcctggagcaggtggatcctgaagcgaaccgtgacggaatggacgctgaccaggtggtg
agagacatcgacaaactattgcaggactgcagaggaagtgaggccactggcacactcagg
aagtga
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