Scomber japonicus (chub mackerel): 128357828
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Entry
128357828 CDS
T09718
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sjo01009
]
128357828 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128357828 (hdac6)
04131 Membrane trafficking [BR:
sjo04131
]
128357828 (hdac6)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128357828 (hdac6)
Enzymes [BR:
sjo01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128357828 (hdac6)
Protein phosphatases and associated proteins [BR:
sjo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128357828 (hdac6)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128357828 (hdac6)
Membrane trafficking [BR:
sjo04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128357828 (hdac6)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128357828 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
128357828
NCBI-ProteinID:
XP_053174191
LinkDB
All DBs
Position
4:complement(30554693..30570841)
Genome browser
AA seq
1125 aa
AA seq
DB search
MPSGSDPPGSGVKSVRRSPRLSPQDTSSNKGDEEKKGESSLQKAKRKGRMERSREEREDE
LEVKLQQLDLSSRAAATGTGLVYTETFTHHKNLWEPNHPESPDRVTFIMKELERQELLSH
CVRVEPREATEGELLLAHMKHYIDLMKSTQTMSESELHTLSDKYDSIYLHPESFKVCLLA
VGSVLQLVDQVMTSQLRNGFAVVRPPGHHAQCNESNGFCVFNNVAIAARYAQTKHKVSRV
LIVDWDIHHGQGIQYQFQEDPNVLYFSVHRFEQGAFWPHLPESDCHFVGSGRGEGRNINL
PWNQTGMTDADYISAFQQLLLPVAHEFQPQLVLVSAGFDAAVGDEKGEMCVSPQCFQVLT
HMLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGACPPLTPPTAPCESALQSISKT
VSALYPYWACLQVLEGVPLTQGRVSRSTANKESTQTTSPAESVATTTGLVYDERMMEHQN
MWDRHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELAMCHSMPHIKQMKSTAEM
KPRDLNKLGNEFNSIYINNQSFQSALLAAGSCFNAVETIMTGQVSNGVAIVRPPGHHAER
DSPCGFCFFNTAALAARYAQKISHNPPLRVLILDWDVHHGNGTQHMFEDDDSILYISLHR
YDNGVFFPSSEDAAPDKVGVAKGTGFNVNVAWSGGRMGDPDYLAAFHHVVMPIATEFNPG
LVLVSAGFDAARGDPLGGYNVTPEGYAHLTNMLMSLAGGRVLLILEGGYNLSSISDSMAM
CTSMLLGDPPPSLVTPLPPPHHSAVATINEVIRHHAPYWRSLRLNIPESVRASLPSPKHR
GKRPSKGKGRRSDQSSTDKPPLPRSGQEADSSLEQLTQGLASLDITQTSSNPASTASTPV
GGARPKARRSVEKVACENEVKTEPSEVKTEPSEVKTEPSEVKTEPSEVTPEKSQSAESTQ
PQPVAVAPSESVAVGDEAAAGAEAEPEPEGACGWTKPQSAFELTCQVQMDGAPMFVVDPL
SWCPHLDAVKSLPPSGIDVFQSCHDCGSVAENWICLTCYQVFCGRYVNEHMVIHGTVSEH
PMVLSFCDLSAWCYLCESYVHNQVLFEAKNAAHFAKFGEEIPPWS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctggatcagatcctccgggatctggagtgaagtcagtcaggagatctcctcgt
ctgtcccctcaggacacgagcagcaataaaggagacgaagaaaagaaaggagagagcagc
ctgcagaaggcgaagaggaaaggaaggatggagcgaagcagagaggagcgagaagacgag
ctggaggtcaaactgcagcagctggatctctccagcagagcagcagccactgggaccggt
ctggtttacactgagaccttcactcaccataagaacctgtgggagccaaatcatcccgag
agtcccgacagagtgacgttcatcatgaaggagctggagagacaagagctgctgtctcac
tgcgtcagagtcgagcccagagaagcgacagaaggagagctgctgctcgctcacatgaaa
cattacattgacctgatgaagtcgactcagacgatgtcggagagtgaacttcacactctg
tctgacaaatacgactccatttacctccatcctgagtccttcaaggtgtgtttgttagcg
gtgggttcggtcctgcagctggtcgatcaggtcatgacctctcaactcagaaacggattc
gcggttgtcaggcctccagggcatcacgctcagtgtaacgagtcaaacggtttctgtgtt
ttcaacaacgtggcgatcgcagctcgttacgctcagaccaaacacaaagtcagcagggtg
ttgatagtggactgggacattcatcacggtcaaggcatccagtatcagttccaggaagac
ccaaatgtcctctacttcagtgtccacaggttcgagcagggagctttctggcctcacctc
ccagagtccgactgtcactttgtcggcagcggacgaggcgaaggacgaaacatcaacctt
ccctggaaccaaacggggatgaccgacgctgattacatctcagctttccaacaattactg
ctgcctgtcgcccacgagtttcagccgcagctggttctggtctctgccggctttgatgct
gcagtcggagatgaaaagggtgagatgtgtgtgagtcctcagtgtttccaggttctgact
cacatgttgatgagtttggctgaaggtcgactcgttctcgctctggagggaggttataac
ctgcagtcgacagcagagggcgctgcagcctgcgtcagagctctgcttggaggagcctgt
cctcctctgactccgcccaccgctccatgtgagagcgctctgcagtccatctctaagacc
gtctcagctctttatccatattgggcctgtctgcaagtcctggaaggcgtcccgttgaca
cagggccgcgtcagcagatcaacagccaacaaggagagcacgcagacgaccagccctgcc
gaatctgttgccacgacaacgggcctggtgtacgatgagaggatgatggagcatcagaac
atgtgggacagacatcatcccgaacagccgcagagaatcttcaagatcttctccaaacat
cagcagctgggattggtcgaccgttgccaacggataccagcgcgtttggcaactgaggag
gaactcgccatgtgtcacagtatgccacacatcaagcaaatgaaatccacagcggagatg
aagcccagagatttgaacaaactgggaaacgagttcaactccatctacatcaacaaccag
agcttccagtccgctctgctggctgctgggagctgcttcaacgccgtggagacgataatg
accggacaggtgagtaacggcgtggcaatcgttcgtcctcccggtcatcacgcagagaga
gactccccttgcggtttctgcttcttcaacacggcggcactcgctgcccgctacgcccag
aaaatctcccacaatccaccgctgcgagtcctcatcctggactgggacgttcaccacggc
aacgggacgcagcacatgttcgaagatgacgacagcatcctctacatctccctccatcgc
tatgacaacggggtgtttttcccgtcgtcagaggatgccgccccggacaaggtgggcgtg
gccaaggggacggggttcaacgtcaacgtggcgtggagtggcggtcggatgggcgaccct
gactacctcgctgccttccaccacgttgtcatgccaatcgctaccgagtttaaccccggg
ctggttctggtgtctgctggattcgacgccgcacgtggggatccgctgggtggatataat
gtgactccggagggatacgctcacctcacgaacatgctgatgtcactggcgggggggcga
gttctgcttatactggagggaggttacaacttgtcgtccatctctgactccatggcgatg
tgcaccagcatgttgctcggcgacccacctccctccctggtgacacccctcccccctcct
caccacagcgccgtagcaacgatcaacgaagtcatccgacatcatgccccctactggagg
tcgctgaggttaaacatcccagaatccgtccgggcttcgctgccctccccaaagcatcgt
gggaaacgtccatctaaaggaaaaggcaggaggtcggatcagagcagcacggacaaacca
ccgctgcctcgttcaggacaagaggcggactccagtctggagcagctaactcagggattg
gccagtttggacatcactcaaacttcttccaatcccgcttccactgcgtcgaccccggtg
ggcggggccagaccaaaggcccgccgcagcgtagagaaggtcgcctgtgagaatgaagtg
aagacggagccgagtgaagtgaagacggagccgagtgaggtgaagacggagccgagtgag
gtgaagacggagccgagtgaggtgacacccgagaagagccaatcagcagagagcacgcag
cctcagcctgttgccgtggcgccgtcagaatctgttgccgttggagacgaggctgcagct
ggagcagaggcggagccagagccagagggggcttgtggttggacgaagcctcagagcgct
tttgagctgacgtgtcaagttcagatggacggagcccccatgttcgtggtggacccgctg
tcctggtgtcctcacctggatgcagtgaagtcgctccctccctccggtatagacgtcttc
cagtcgtgtcatgactgcggctccgtggccgagaactggatctgtcttacatgctaccag
gtgttctgtgggcggtacgtcaacgagcacatggtgattcacggtaccgtgtctgaacac
ccgatggtcctcagcttctgtgatctgtctgcgtggtgttacctgtgtgagtcgtatgtg
cacaaccaggttctgttcgaagctaaaaacgctgctcattttgccaaatttggagaggag
atccctccgtggagctaa
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