Scomber japonicus (chub mackerel): 128358350
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Entry
128358350 CDS
T09718
Name
(RefSeq) transcription factor SOX-6-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128358350
Transcription factors [BR:
sjo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128358350
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
AAA_23
Activator_LAG-3
MPS2
Motif
Other DBs
NCBI-GeneID:
128358350
NCBI-ProteinID:
XP_053174567
LinkDB
All DBs
Position
5:complement(8035886..8145027)
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AA seq
780 aa
AA seq
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MMSSMRATPPFHPPSEEEEAIGHDSAAWANDEREGPKESKASPSPSHDQPHPDEAQPIRE
KQTDAEWENVGPAAMDNESSKGCSIYSYRTNSTSPPKPEECSRDRGEPMIGLAFGTPERR
KGSLADVVDTLKQKKLVELTKTEQDEPSCMERLLSKDWKERVDRLNANELLGEVKGTPES
LEEKERQLSTMIGQLISLREQLLSAHDEQKKMAASQMEKQRQQMELARQQQEQIARQQQQ
LLQQQHKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPGENY
PMQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLQQAPNSSGPLSPSALK
SEKRSSSPVTHIKEEGSIQPLNLSARPKTAEPLRSPTSPTHSLFSGNKTSPTGLGKGRIP
SPISTMGRNTSLDILSSLNSTALFGDQDAVMKAIQEARSMREQIQREQLHQQQQQQQPGH
HSLEAKLSALSSMSLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGNNI
TEARVFREARGRNNNEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAM
TNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMR
QFFVGPQPPIPLGNSAGGVGVYPGAITMATTATPSPHLTSDCSSNSASPEPAIPVIQSTY
GMKSEPGGCVGGNGGGVSALDMPSDPTNGDDDMDMYEDFEDEPKSDYSSDHETREAVSAN
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaacgcctccctttcacccaccatctgaggaagaggaagcg
ataggtcacgacagcgcggcctgggccaacgatgagcgagagggtccaaaggagtcgaag
gcatcgccgtccccttctcatgaccaaccccaccctgacgaggcgcagccaataagagag
aagcagacagatgctgagtgggagaatgtcgggcctgctgcgatggacaatgaaagcagt
aagggctgctcaatctactcctaccgtactaactctacctctccacccaagccagaggag
tgttccagggatcgcggggaaccgatgatcggcctcgctttcggtacgccggaacgccgc
aaaggaagcctggcagatgtggtggacacactgaaacagaagaagctcgtggagctgacc
aagacagaacaagacgaaccgtcctgcatggagagactcctctctaaggactggaaggag
cgtgttgaccgcttgaatgctaacgaattgctgggtgaggtcaaaggtacgccagagtcg
ctggaggagaaggagcgccaactttccaccatgattggtcagctgatcagtctgagggag
cagctcctctctgcccacgacgagcagaagaaaatggccgcctcacagatggagaagcag
agacaacagatggaattggccaggcagcagcaagagcagattgccagacaacagcagcag
ctcctgcagcagcagcacaagattaacattctccaacaacagatccaggtccagggtcac
atgccccctctgatgatcccagtgtttcctcacgaccagcgatctctggctgctgccgcc
gctgcacagcaaggcttcctcttcccaccaggcatgtcctataagccaggtgagaattac
cccatgcagttcattccatcgacaatggcagctgcagcggcgtctggactcagcccgtta
caactacagcagttgtatgctgcccagctggcaagcatgcagatctcaccaggagccaag
atggctcccctccagcaggctcccaactcctccggtcccctttccccctctgccctgaag
agtgagaagagatcatccagtcctgtcactcatattaaggaggaaggatccatacagcca
ttaaacctctcagccagacccaagacagctgagcctctccgctccccgacatccccgaca
catagtctgttctccggaaacaagaccagccctactggcctgggcaagggccgcatcccc
agcccgatctctaccatgggcaggaacacctccctggacatcctctccagcctgaactcc
acagcgctgttcggggaccaggacgccgtgatgaaggccatccaggaggccaggagcatg
agggagcagatccagagggagcagctccaccaacagcagcagcagcagcagccgggacac
catagcctggaggccaaactgtccgccctcagcagcatgagcctcaacaacggcaacaag
gagcggctgcactatgagacgctgagccagcacctggggaagctcggggaggatgctggg
aagatggtccatcgagtaattgacctgacgagaccagaagatctggatggcaacaatata
accgaggcacgagtgttcagggaggcgcggggcagaaacaacaacgagccgcacatcaag
aggcccatgaacgccttcatggtgtgggccaaagacgagaggaggaagatcctgcagacc
ttccctgacatgcacaattccaacatcagcaagatcctaggctcacgttggaaagccatg
accaaccaggagaagcagccatactatgaggagcaggcccgcttaagcaagatccatttg
gagaagtatcccaactacaagtacaagccgcggcccaagagaacctgcatcatcgacggc
aagaagctgcgcattggggagtacaagcagatgatgcggtcacggcgtcaggagatgagg
cagttctttgtggggcctcagcccccgattcctcttggcaacagtgcaggtggcgtagga
gtctacccgggcgccataaccatggcaacaacagccacgccgtccccacacctgacctca
gactgctccagcaactcagccagccctgagccagccatccccgtcattcagagcacgtat
gggatgaagtctgagcccggcggctgcgtaggtggcaatggcggtggggtcagcgccttg
gatatgcccagcgaccccactaacggagacgacgacatggacatgtacgaggattttgag
gatgagcccaagtcagactatagcagcgaccacgagacacgggaggccgtcagtgccaac
tga
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