Scomber japonicus (chub mackerel): 128358405
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Entry
128358405 CDS
T09718
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04137
Mitophagy - animal
sjo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128358405
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128358405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128358405
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
128358405
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128358405
Multi subunit type E3
ERAD complex
128358405
LMBR1L-GP78-UBAC2 complex
128358405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-RING_16
zf-RING_5
Prok-RING_4
Baculo_IE-1
zf_RING_Vps8
RING_XB3-XBAT31
zf-C3HC4_4
SVIP
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
128358405
NCBI-ProteinID:
XP_053174641
LinkDB
All DBs
Position
1:complement(15605344..15616364)
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AA seq
621 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSVALLAGSIFSAYTTVTDPGFGALETDDTPAPSEVDLEHL
NNDISNTELATTVLWYLVTDSLFVWVLVNTFCCSLMLIAKMIQYVVFGPLRVSEKQHLKD
KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFSALVFLHLMVQLCKDRFEYLSFSPSTPM
NSHVRVLCLLVSLLLDCCGLAVVCGLLGASHGMHTLSFMAAECLLVTVRTGHVIMRYSIH
LWDLNHPGTWESKGTYVYYTDFIMELAMLFLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
LFHEVQRRVRRHKNYLRVINNMEARFAVATAEELAANDDDCAICWDTMLTARKLPCGHLF
HNSCLRSWLEQDTSCPTCRTSLNISGDSNQTRGQQQGGGLEDNIGPVGAAADPRPHINQH
NHFFHFDGSRIASWLPSFSVEVMHTTNILGIAQANNSQLMAMAHQIQEMFPQVPSYLVMQ
DLQLTRSVEVTTDNILEGRIQVPFPTQAIERSSLQGAAGPEGEQAGPSGAAEESLGEPDN
MEVRGGRFSKSAEERQKMLKQRKEEMLQHARRRYLNKSPEDQDEDLPGLEEDMVLELDST
VLRRRTMAAAAERRLQQDPAP
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctgtttctggagaggtttccctggcccagcctgcagacgtacacagcactg
agtgtggctttgcttgctggcagcatcttcagcgcctacactactgtgactgatcctgga
tttggggccctggaaactgatgatacaccagccccctctgaagtggaccttgaacatcta
aacaatgatattagtaacacagaattggcaaccactgttttgtggtacttggtcactgac
agtctttttgtatgggtgttagtcaacaccttctgctgctcgttgatgctgatcgctaaa
atgattcagtatgtggtgtttggtccacttagagtcagtgagaagcagcacctgaaagat
aagttttggaacttcatattctacaaatttattttcatatttggcgtactgaacgtgcag
acagtggaggaggtggtcatgtggtgtttgtggttctctgccctggtctttcttcacctc
atggtgcagctctgcaaggacagatttgaatatctgtcattctccccctccactcccatg
aacagtcatgtgcgagtgctgtgtctgctggtctccctgctgctggactgctgtggcctg
gctgtggtttgtggtctgctgggagcttctcatggcatgcacactctctcctttatggca
gccgagtgtctgctggtgactgtacgcacagggcatgtcattatgcggtactccatccat
ctgtgggatctgaaccacccagggacatgggagagtaagggaacctatgtctactacaca
gacttcatcatggaactggctatgctctttttggatctcatgcaccatatccacatgttg
ctttttggtaatatctggttgtccatggcaagcttggtcatcttcatgcagttgcggtat
ctcttccatgaggtccaacgccgcgtccgcagacacaagaactaccttcgtgtcatcaac
aacatggaggccagatttgctgttgctactgcagaggaactggcagctaatgatgatgat
tgtgccatctgttgggataccatgttgacagcacgcaaacttccctgcggtcacctcttc
cacaactcttgtttgcgctcctggctagagcaggacacctcctgtcctacatgtcgtaca
tccctgaacatcagtggggacagcaaccagacaagaggccagcagcagggtgggggcttg
gaagacaacattggtcctgtaggagctgctgctgatcctagaccacatatcaaccaacac
aaccatttcttccactttgatggatcccgtattgccagctggctgcccagcttctcagtg
gaagtgatgcatactaccaatatcttagggatcgctcaagccaacaactctcagctcatg
gccatggcccatcagatccaggagatgttcccacaggtgccctcctacctggtaatgcag
gacctgcagctgacccgctctgtggaggtcaccactgacaacatcctggagggacgcatc
caggtgcctttccctacacaggcaattgagcgctcctctttacagggggctgctggacca
gagggagagcaggcagggcccagtggagcagctgaggaaagcctcggtgagccagacaac
atggaggtcagaggtggtcgtttctctaagtcggctgaggagaggcagaagatgttgaag
cagaggaaagaggaaatgctccagcatgcacgcaggagatatctaaacaagagtccagag
gatcaggatgaggatttgcctggactggaggaggacatggtcctagaattagactctact
gtgctgagacgtagaaccatggcagcagctgcagagagacgcttgcaacaagaccctgca
ccctga
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