Scomber japonicus (chub mackerel): 128358426
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Entry
128358426 CDS
T09718
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04510
Focal adhesion
sjo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128358426 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128358426 (lamb1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
CODH_A_N
ATG17_like
Alanine_zipper
F5_F8_type_C
PRR20
Motif
Other DBs
NCBI-GeneID:
128358426
NCBI-ProteinID:
XP_053174664
LinkDB
All DBs
Position
5:103471..130099
Genome browser
AA seq
1801 aa
AA seq
DB search
MLKMFVLLLLALQALTLVQVVAQEEGAQMGGGQEGGGQVDGSLPELSDVCTEGSCYPATG
DLLIGRAHQLFSTSTCGLNRPEPFCIVSHLQEEKKCFVCDSVESYDELTNQTSNHRVENV
VTTFAPNRLKTWWQSENGLENVTIQLNLEAEFHFTHLIMTFKTFRPAAMAIERSADFGNS
WQVYRYFAYDCETSFPSVSHGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFQIDDP
YSPRIQNMLKITNLRVKFTKLHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASE
CAPIQGASQAREGMVHGHCMCNHNTKGLNCELCQDFYHDLPWRPAEGRNTNACKKCNCNQ
HSDSCHFDMAVFVASGNVSGGVCDDCQHNTAGHSCEQCRPFYYQHPERDVRDPNICQQCN
CDPVGSLNGGLCDRTTDVRAGLIAGQCRCKVNVEGERCERCKQAYYGLSDEPEGCKACTC
SPLGTVPGGNPCDSETGSCFCKRLVIGRDCDQCVSEHWGLSNDVDGCRPCDCDLGGAVNN
QCDQQSGQCSCRSHMFGRRCDQVESGFYFMALDHYTYEAEDAKFGPGVTVVPRPHPLDRS
PTWTGVGLVNVPEGAFLEFSIDNIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPGPIRAD
SRCVNTVPDDDHQTVSLHPGSRYVALPRPVCFESGLNYTVRLSLPLYSALSDVQSPYTLI
DSIVLMPHCKNLDLFTPSEGGESSSWDTFQRYRCLENSQGVIKSQMTDICRNFIFSISAM
LHQGAKECQCDPQGSLSTVCDASGGQCQCRPNVVGRNCDRCAPTTYQFGPNGCRACECDS
QGSQHPFCDQLIGQCSCVSGAYGRQCERCLPGHWGFPTCQPCTCNGHSDTCDAATGRCLA
CRDHSTGPHCDRCLDGYYGDPVLGSGDHCRPCMCPDGPGSLRQFAGSCYRADSSQQAVCV
CNTGYKGARCDECSPGYYGNPGEAGGQCRPCQCNNNINMMDPDSCDSRTGECLRCLHHSE
GPSCESCKLGYYGNALLQDCRKCVCNQLGTDASSCPSPGDCHCDRSSGQCRCFPNVIGQL
CDRCAPDSWNMASGRGCQTCDCDAKHSDQTSCNEISGQCSCHPGFGGRTCSECRELFWGD
PEVKCHACDCDPRGIVDQQCDKVKGHCVCVEGVSGPRCDSCSRGFSGTFPDCRRCHRCFS
EWDAVIGQLTNQTHRLVNKVNAIKASGAGGPYRKSIASMERNAADIRVLLDQNPAAEPLS
EIQDLLQQASDLMGNLNQALNHTETLVQVQEGDRRVGLKLDSVSADAQKLDQTVRDLLDQ
LEVVKNSDIRGATASVTKYFLQSQAAEARANASTFDPGSAVQSSALLRRLTEDKINQSGA
GFLQRHTEHAQNLDDLAGHLQTLDLSELSTKTCSPVDPVDPADPVDPVDPVDPADPVDPA
DPDCDGLVMKAHSSWMKARESDQEILSAMQEVDRLSKMVQEAKLKADEAKLSAQNVLMRT
NRTKQNVDQSNEELRTLIKQIRDFLTQDAADLQSIENVANQVLALQMPTTAVLLQNLTAE
IRIKVSELGDVEEVLKQSADDIQRAENLLDQARRAGTEASDVRDSAQEVKRALKEAQRAQ
TAASGAIRQAAADILNTNQLLSSVESETEDTEVKLNNATRRLQRLGQDVTLLRDKARNVT
LNTKQTNQDAASIRKMAEEVKKELNSEVKGQYATVEQLIGQKAAGVTDAKKRAESLQQEA
KELLLQASNKLQLLKELERSHDENQLALEQKAEQLVELEAAVKELLQQISQQVTVYSTCL
F
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagatgttcgtgctgctgctgctcgctctacaggcgctcaccttggtccaggtg
gtggcccaggaggagggggcccagatgggggggggccaggaggggggggggcaggtggac
ggcagcctcccggagctcagtgacgtctgcactgaaggcagctgttacccagcaacagga
gaccttctgattggacgagcccaccagctgttttctacctccacctgcggactgaaccgg
cccgaaccgttctgcatcgtcagccacctgcaggaggagaagaagtgcttcgtgtgtgac
tccgtggagtcctacgatgagctgaccaatcagacgagcaaccatcgagtcgagaacgtc
gtcacaacattcgctccaaacaggctgaagacctggtggcagtcagagaacggtctggag
aacgtcaccattcagctgaacctggaggccgagtttcacttcacgcatctcatcatgacg
ttcaagacgtttcgtcccgctgccatggcgatcgagcggtcagctgacttcgggaacagc
tggcaggtttatcgttacttcgcctacgactgcgagacgtccttcccgtccgtctcccac
gggcccatgcagaaggtcgatgatgtcatctgtgactcacgctactctgacatcgagccg
tccacggaaggagaggtgattttcagagttctggatccggcgtttcaaatcgatgatccg
tacagtcctcgaatccagaacatgttgaagatcaccaatctgagggtgaagttcaccaag
ctgcacacgctgggcgataacctgctggactctcgtatggagatcaaagagaagtattac
tacgccgtctacgacatggtggtccgagggaactgcttctgctacggacacgcctctgag
tgcgcccccatccagggagccagccaggccagggagggcatggttcatggtcactgcatg
tgtaaccacaacaccaaaggtctgaactgtgaactgtgtcaggacttctaccacgacttg
ccctggagaccagcggagggtcgcaacaccaacgcctgcaagaagtgtaactgcaaccag
cactcggactcgtgtcacttcgacatggccgtgttcgtggcgtcgggaaacgtgagcgga
ggcgtctgtgacgactgtcagcacaacacggccggacacagctgtgagcagtgccgaccg
ttctactaccagcatcctgagagagacgtcagagaccccaacatctgccagcagtgtaac
tgtgacccggtgggctcgctgaacggaggactctgcgacaggacgacggacgttcgagcc
ggactgatcgccggtcagtgtcgctgtaaagtcaacgtggaaggagaacgctgcgagcgc
tgcaagcaggcgtactacgggctgagtgacgagcccgaaggctgcaaagcgtgcacgtgc
agccctctgggaacggttcctggtggaaatccctgtgacagtgaaacaggaagctgcttc
tgtaaacgactggtgattggacgagattgtgaccagtgtgtgtctgaacactggggtctc
agtaatgatgttgatggctgcagaccatgtgactgtgacctgggaggagccgtcaacaac
cagtgtgaccagcagagcggccagtgcagctgcaggagtcacatgttcggccggcgctgt
gatcaggtggagtcgggtttctacttcatggctctggaccactacacctacgaggccgag
gacgccaagttcggacccggggtgacggtggtgccgaggccccatcctctggaccgcagc
cccacctggaccggagtcggcctggtcaacgtcccagagggggcgttcctggagttctct
atcgacaacattcctcactccatggagtacgacatcctgatccgctacgagcctcagctg
ccggaccaatgggaggaggttctgatgacggtgatgagacctggaccaatcagagcagac
agccgctgcgtgaacaccgtccccgacgacgaccaccagaccgtctcgctccaccccggc
tcacggtacgtggctctgcccagacccgtgtgcttcgagtccggtctgaactacacggtc
cgcctcagcctgccgctgtactcggccctcagcgacgtccagtccccgtacacgctcatc
gactcgatcgttctcatgcctcactgtaagaacctggacctcttcacgccgtctgaagga
ggagagtccagcagctgggacacgttccagcggtaccgctgcctggagaacagccagggg
gtcatcaagtcccagatgaccgacatctgcagaaacttcatcttcagcatctccgctatg
ctgcaccaaggagctaaagaatgccagtgtgaccctcagggctcgctgagcaccgtgtgc
gacgccagcgggggtcagtgtcagtgtcgccccaacgtggtcggcaggaactgtgaccgc
tgcgctccgaccacctatcagttcggacccaacggctgcagagcctgtgagtgcgactct
caggggtcccagcatccgttctgtgatcagctgatcggtcagtgcagctgtgtgtccgga
gcgtacggccgtcagtgtgagcgctgcctgccgggtcactggggcttcccgacctgccaa
ccctgcacctgtaacggccacagcgacacctgcgacgccgccaccggccgctgcctcgcc
tgcagagaccacagcaccggaccccactgcgacaggtgtctggatggttactatggcgac
ccggtgctggggtcaggcgaccactgtcgtccctgcatgtgtcccgacggacccggcagc
ctgcggcagttcgcaggaagttgttaccgtgccgacagctcccagcaggccgtctgtgtt
tgtaacactggatacaaaggtgctcgctgtgatgagtgctcacctggttactatggaaac
ccaggtgaggcaggagggcagtgccgaccctgtcagtgcaacaacaacatcaacatgatg
gacccggactcctgcgacagccggaccggcgagtgtctgcgctgcctgcaccacagcgaa
ggtccttcctgcgagagctgcaaactgggttactatggcaacgccctgctgcaggactgt
aggaagtgcgtctgcaaccagctgggcacggatgcgtcgagctgtccgtctcctggcgac
tgtcactgcgaccgcagcagcggacagtgtcgctgcttccccaacgtgatcggccagctc
tgcgaccgctgcgctcctgattcctggaacatggcgagcggccgcggctgccagacctgc
gactgcgacgccaaacattcggaccagacttcgtgcaacgagatcagcggtcagtgctcc
tgtcatcccggcttcggaggaagaacatgcagcgagtgcagagagctgttctggggagac
ccggaggtcaaatgtcacgcgtgtgactgtgacccccgtggtatcgtggatcagcagtgt
gataaggtcaaaggtcactgtgtgtgcgtggaaggcgtgtcgggtcctcgctgtgactcg
tgttctcgcgggttctccggaacgttccccgactgccggcgctgccaccgctgcttctcc
gagtgggacgccgtcatcggccagctgaccaatcagacgcaccgcctcgttaacaaggtc
aacgccatcaaagccagcggcgccggcggcccgtacaggaagtccatcgccagcatggag
aggaacgccgccgacatccgggttctcctggaccagaaccccgccgcagaaccgctcagc
gagatccaggacctgctgcagcaggccagcgacctgatggggaacctgaaccaggcactg
aaccacacggagactctggtccaggtccaggagggggaccgccgggtcggactgaaactg
gattctgtgtcagcagacgctcagaaactggaccagacggttcgggacctgctggaccag
ctggaggtcgtcaagaactccgacatcagaggggcgaccgctagcgtcacaaagtacttc
ctgcagtctcaggcggctgaagcccgagccaacgcgtcgacctttgaccccggcagcgcc
gtgcagagctccgccctcctgcggcggctcactgaggacaagatcaaccaatcaggagcc
ggcttcctgcagagacacactgagcacgctcagaacctggacgacctggcgggacacctg
cagaccctcgacctatcagagctcagcaccaagacctgcagcccggtggacccggtggac
ccggcggacccggtggacccggtggacccggtggacccggcggacccggtggacccggcg
gacccggactgtgacggtctggtgatgaaggctcacagcagctggatgaaagctcgggag
tccgaccaggaaatactcagcgccatgcaggaagtggaccggctctctaagatggtccag
gaagccaagctgaaggcggacgaggcgaagctgagcgcgcagaacgttctgatgagaacc
aacagaaccaaacagaacgtggaccagagcaacgaagaactcagaaccctcatcaagcag
atccgagacttcctcacacaggacgcagcagacctgcagagcatcgagaacgtggccaat
caggttctcgcgctgcagatgccgacgacggcggttctcctgcagaacctcacggctgag
atccggatcaaggtctcggagctcggagacgtggaggaggttctaaagcagagcgctgac
gacatccagagagccgagaacctcctggaccaggctcgcagggccggaaccgaagcgtca
gacgtcagagactcggcacaggaagtgaaacgagctctaaaagaagctcagcgagctcag
acggcggcgagcggcgccatccggcaggcggccgccgacatcctcaacaccaaccagctg
ctgtcctccgtggagtcggagacagaagacacagaggtgaagttgaacaatgcgacccgg
cggctgcagcggctcggacaggatgtgactctgctgagagacaaagctcggaacgtcaca
ctgaacaccaaacagaccaatcaggatgcagcaagcatcagaaagatggcagaagaggtg
aagaaggagctgaactcggaggtgaaaggtcagtacgccactgtggagcagctgattggt
cagaaagcagcaggtgtgaccgacgccaagaagagggcggagtcactgcaacaggaagcc
aaagagctgctgctgcaagctagcaacaagctgcagctgctgaaagagctggagaggtca
catgatgagaaccagctggcgttggagcagaaggcggagcagctggtggagctggaagcc
gccgtgaaggagctgctgcagcagatcagccagcaggtcaccgtctacagcacctgtctg
ttctag
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