Scomber japonicus (chub mackerel): 128358508
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Entry
128358508 CDS
T09718
Symbol
snx1a
Name
(RefSeq) sorting nexin-1a
KO
K17917
sorting nexin-1/2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128358508 (snx1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128358508 (snx1a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
128358508 (snx1a)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Macropinocytosis
Sorting nexins
128358508 (snx1a)
Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
128358508 (snx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Sorting_nexin
Motif
Other DBs
NCBI-GeneID:
128358508
NCBI-ProteinID:
XP_053174796
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Position
5:9312716..9325094
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AA seq
804 aa
AA seq
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MATSSERSPPPFPDSSEDQDVLDSEDVEEGGRGGGGSDEEEGDDLFISTIEAPLTEMDPT
PLSANLLSDDLMDPPSDIMNDPLFEPVSIQTETKPASEVVSEPSDDFVDLTNNLMTPDDK
IVDVSAAADAAKDTTEIPLDEPSDDFVDLLGSETEAPQEEVVFADVSVGVATDKSEVTSS
DTDPPGEAEQEVKETFTAPIIDISADLSSMNSQPPPASDKILDPLADLLSDPAPVEAKKP
SAMPDLFEDDGSDLFAEPLQATPAKQPQKSLFGEPDEDLFSEPLGATAKKTATKEQKDKP
VTTKAAAVAAASVSNISGPLHESNQGEPADIFSEEAIATAPSVSTTSSVNSKTNGVHSEE
DTDLFAEATVELSLDSPRNERKTDVTAKPSASAPSLSAAASLVKPQAAALEELEEEEEEE
EEDKFEISVSVTNPEKIGDGMNAYMAYKVATQTTLSMFRNKTFTVKRRFSDFLGLYEKLS
EKHGPNGFIVPPPPEKSILGMTKVKVGKEDSSSTDFVERRRGALERYLQRVVTHPSLIQD
PDVREFLERDELPRAVSTQALSGAGFLKMINKATDAVSKMTIKMNESDVWFEEKLQEVES
ADQQFRKLHALVESLVVHRKELSLNTASFAKSTAMLGSAEDNTALSRALSQLAEVEDKME
QLHQDQAANDTFCFAELIADFIRLLGAVRGSFDHRMKAWQRWQDAQAMLQKKREVEAKLL
WANKPDKLQLAKEEIAEWEAKVTQYERDFERVSATVRKEVVRFEKEKAKNFKRQIIQYLE
SQLQSQQQLIKYWEAFLPEAKAIA
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccagctcggagcgtagtcctcctccgttccccgactcctcggaggaccaagat
gtgcttgactccgaagacgtcgaagaaggaggaagaggaggaggaggtagtgatgaagaa
gaaggcgacgacctcttcatctccacgatcgaagctccactgaccgaaatggatcccaca
ccgctatctgctaatctgctcagtgatgatttaatggatcctcccagtgatattatgaat
gatccattatttgaacccgtcagcatccaaacagaaaccaaaccagccagtgaagttgtc
agcgagccctcggatgattttgtcgacctaacaaacaacctgatgactcctgatgacaag
attgtagatgttagtgctgccgcagatgcagcaaaagacacaactgaaatccctctagat
gaaccctcagacgattttgttgacctattgggaagtgaaactgaagcaccacaagaggaa
gtagtgtttgcagatgtttctgttggagtagcaacagataaaagtgaagtgacgagcagt
gacacagatccacctggtgaggctgaacaggaagtaaaagaaactttcactgcaccgatt
atcgacatcagcgccgatttgtcatcgatgaattcacaaccaccacctgccagtgacaaa
attcttgaccctttggccgaccttcttagtgatcctgcacccgttgaggccaaaaaaccg
agcgccatgccggacctgtttgaagacgacggcagcgacctgtttgcagaacctctgcag
gctacgccggccaagcagccacagaaaagcctgtttggagaacctgacgaggatctgttc
agcgagccgctgggcgccacggcaaagaaaaccgccaccaaggagcagaaggacaaaccc
gtcacaaccaaggctgctgctgttgctgctgctagtgtcagcaacataagtggacctctg
cacgagagtaaccagggagagcctgctgatatcttctctgaggaagccatcgccacagcg
cccagcgtcagcaccacaagcagcgtcaactccaagactaatggagtccactctgaagaa
gacacagatttatttgcagaagccacagtggagctttctctcgacagtccgcggaatgag
agaaagacggacgtgactgccaaaccgtctgcatccgccccctctctgtcagcagctgcc
agcctggtcaagcctcaggctgctgccctggaggagctggaagaagaggaagaagaagag
gaggaagacaaatttgaaatctcggtgtctgtcactaaccctgaaaaaataggggacggg
atgaacgcctacatggcctacaaagtagccacacagaccacactgtccatgtttcgcaac
aagacctttacagtcaagcgacgcttcagtgacttcctcggcctttacgagaaactgtct
gaaaaacatggaccaaatggattcatcgtgcctccgccgccagagaagagcattctgggt
atgacaaaagtgaaggtgggaaaggaagactcctcatctacagactttgttgagcggaga
agaggtgcattggagaggtatctccagagggtggtgactcacccatcacttatccaagat
cctgatgtcagagagttcctggagagagacgaattgcccagggcagtgagcactcaggct
ctgagtggcgccggcttcctgaaaatgatcaacaaagcaacagatgcagtcagtaaaatg
accatcaagatgaatgaatcagacgtgtggtttgaggagaagctgcaggaggtagagtct
gcagaccagcagttcaggaagctccacgcattggtcgagtctctggtcgtccacagaaaa
gagctgtcgttgaacacggcgagctttgccaaaagcacggccatgctgggcagcgcggag
gacaacaccgctttgtcccgcgccctctcccagctggcagaggtggaggacaagatggag
cagctacaccaggaccaggcagcaaacgacaccttctgcttcgccgaactcattgctgat
tttatccgcctgctcggtgccgtgaggggctcgtttgatcaccggatgaaggcgtggcag
cgttggcaggatgcgcaggccatgctgcagaagaagagagaggtcgaggccaaactgctg
tgggccaacaagccggacaaactgcagctggccaaggaggagatcgccgagtgggaggcc
aaggtgacgcagtacgagagagactttgaaagagtctctgccaccgtgcgcaaggaagtc
gtccgctttgagaaagaaaaagctaagaatttcaaaagacagataattcagtacttggag
tctcagcttcagtcgcagcaacagctgataaaatattgggaggctttcttaccagaagca
aaagcaatcgcctaa
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