Scomber japonicus (chub mackerel): 128358558
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Entry
128358558 CDS
T09718
Symbol
spg11
Name
(RefSeq) LOW QUALITY PROTEIN: spatacsin
KO
K19026
spatacsin
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128358558 (spg11)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128358558 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
DUF8181
Motif
Other DBs
NCBI-GeneID:
128358558
NCBI-ProteinID:
XP_053174864
LinkDB
All DBs
Position
5:complement(3891513..3935916)
Genome browser
AA seq
2403 aa
AA seq
DB search
MLEAQQLEKMSIEVCVIPENQQCGEVADIQRAERAPGGSLLGCLDVQGSLLVWDPADREA
PPATVEGSYRDFCWEEVSVHSRGVSSFGLLAVGSQCDLKLLEVETERPASITPLCVCECP
ADRLLQPIREKDQSVSELQSASVLSFSAGRCCVLLNGGWLLQLQWQQTEEELQTLTCCNI
QPTDSDTHTAVHHCVCRETLFTLSSTGLISVCNLTDGGLLATVDLLAYLSSNLMEEEFVS
SSPSFSSSSSFCFLQVSADLSTAVAVTQSHDAIAVDLNHYFRIYPDHLLCAAPPARLPLR
PQNPRDEDSLPSSNCSLSALGSNFSTDRSWEARLASMTSRAQQPLSSSSSSSSSSSSSSW
SSSLPHLESRQAPSSTHSRVPSGGATVALSVPESSSLSQLTVSEFSALLTFVSPGNRQTT
VAFWEMESGSVSYHQAEGEAAPVQSCGEQHHTLLLKKSGVFQVLFSVSQQDLLSRLMLFG
SAATVDAVCHLNSWGRCSIPIHALQAGLKNRQLDTVDFYLKSKENVLYPSTAFGSADEPA
ASTLSLTDSVQELCPALDLLCSAVRDSHSEAQSRQFSEQLLNITMSFVNTQIRCVLTNTH
HKDAGVQSCVDILDRYVTELRSYMKRFPWPAGGDTSSTETAAPAEKEAQEDEWERLSTEE
VVCQSILTNQIPRAQAVLRRRSRPEQRLSSLRTEGLRQVFSCLQQRDLQTANMLLTNMGF
SVKKQLHSICLYTDDKELREFVVEELLRRSYFLEEEMQSVEFIRQMEKLGSLPASRCPAN
ASSQRVAHMVRMEAGGEGVLKELVGQRRSEEEKGLWRNLRLDWVRNWNQSSQTSVLLSRL
QHTELTSCDLAVLWRYLTALHDQHRVIDWIQHSEASGASRWPELTPELVNNNTVCSSYMK
ENILDLLARRGVFIPEELADLEQLLWRLAQGGGVMASTPPVPQYRSPLGLDLHSLFISFC
LERSLQYLLYAYLEHYRLTPRNCPLLVNQSLSESQPWFEMLVKIQEITRDLSDPGLVFQA
SLTSAQVLLPGSQASLSSLLLEGHSLLALAAIMFTPGGIDQVVLQGERSGRSEKTVDPQL
LKMALATHPKLKAALFPAGPRGNNQPSDISVYHLLQSLNPLDPSRLFGWQAANTLNSTET
TELPHFSSPHLVNKFALVENLDYLYYLRHGRPSFAYATFLVQQLSSCSDVRLLLQQALQQ
VYRLALQCFNVASVASAAACFCELLGVCSLKLRVDIRAMNVILQHWNQLNTHITPAQHLH
TLVSKGVKLVEAELRASEELIGYLEAAVTDSLEQKGVGRSSYEASQDWALPVQFCQLHCL
NLSSVYPAHCAADGQFIHFLLFVQLHNFPPQQVRSLAAEFGPALQAHLSLAFQELQVYSQ
RKGDDAEEQTGSLNTEEHPCRPEHPKELFQVLLQSQEEAAASTYLLQEALVQRCPTLAVL
AACQQVPELLPCLCVWVLTSVDDVTAKEATSHLPEAPQYHEWTLHDLSIIWRTLLERGHV
RPLLRGFELFQRDCPLVLVLRMFELCCDYRNFSEAKAKLLDFQRMLITLRNSGPAPSGGL
PLQWVESQASVLLLTMLQRCSSQYDLHRLLQLLADVDKHLKSNGPDFRKLSQLSQVLQGS
EVSISPRLLQCTSASVQQEEFQAAVDALQARGLYSKARQVAQLAGLPIHRLLLSQLLQEV
NSQRAKRQWGRLETRVSFWRKCHEQLKADGTDPESASQFFLSQAESGSTQAETERLDVQE
RCLLLGLAAHWLSLHSPAPVDKVESLEKKLWMSRVRQHILTVAMEKESVFNLPPPAVTPE
MNTYEVFMKEFSFSNISDLNTETCLGLEGLPGPTEQRQEEQNITGPEERKVLAKLIGQLL
DEGSIHEASRVCRYFSLYHPDMWVVLRCRGLASGELDPEPQDEATEAPERKLLTTSTSFS
SLSSFVMLPLEDDVAIQLQKLVDQCRHGNNYCKQVLSLYQLSKELQCSFSQICKEEPGSV
LEKLLLSDQSERFRKAQAFIKAQSFCADTVAELVSSAVVQALLASNQELQPEKQVFRPSE
GWDSLMQLIKLCDDPNLVGVKLLENLNSVPLRDLNCIVELLIVAHDCFSLTCNMEGIVRV
LQAARHLSHTYLAPGEHFSLLVRLLTGISRYNEMTYIFDLLHQNHRFEMLLRKKVDTDRG
QSSSLKTALLDYIKRCLPADSEKHNMVALCFSMRREIGENHEIAARTQLKIIESQDWVVT
PELKSSLVKVLGLLKDAAESFSKDSCVRQASRCVRMAKLVALQLHFLNQGSDLRVINLRP
AEMLKAVMALPRCYQVFVVSEACSYSPDWVEILYQKVILNGDFAYLEELKRHRPLTSSLF
EDIFKKLDGAPSSVTPNVKRLLTHCDDVYSRYRLAYQQNLHDVTKTLLQDAKTSSYLNDK
LAS
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgttagaggctcagcagctggagaagatgtccatcgaggtgtgtgtgatcccggagaac
cagcagtgtggagaggtagcggacatccagagagctgaacgggctcctggaggctctttg
ctcggatgtctggatgtccaggggtcgctgctggtctgggacccggcagacagagaggct
cctccggcgacagtagagggatcataccgggacttctgctgggaggaggtgagcgtccac
agtcgaggtgtcagcagcttcggactgctggctgttggatctcagtgtgacctcaagctg
ctggaggtggaaacagaacggccggcctccattactccgctctgtgtctgtgaatgtcct
gcagaccgcctgctgcagcctatcagagagaaggaccaaagtgtgagcgagctgcagtcg
gcgagcgtgctatcgttttcggccggccggtgctgcgtgctgctgaacggcggctggctg
ctgcagcttcagtggcagcagacggaggaggagctgcagacgttgacctgctgcaacatc
cagccgaccgacagcgacacacacacagcggtccatcactgtgtgtgcagagaaacactg
ttcaccctcagctccactggactcatatctgtgtgtaatctcaccgatggcggtcttctt
gccaccgtcgaccttcttgcctacctgagctctaacctgatggaggaggagttcgtctcc
tcttcgccttccttctcctcctcttcctccttctgtttcctccaggtgtcagctgatctc
agtacagctgtagccgtcactcagtctcacgacgccatcgccgtcgatctcaaccactac
ttcaggatttatccagaccacctgctgtgcgctgcccctcctgctcggctccccctccga
ccccagaaccccagagatgaggacagtctgccgagctccaactgcagcctctccgccctc
ggatcgaacttcagcactgatcgctcctgggaagctcgtctggcttccatgaccagccga
gcccagcagcctctatcttcctcctcctcttcctcctcctcctcctcctcttcctcctgg
tcctcctcgctcccccacctggagtcccgccaggctccatcttcgacccatagcagagtc
cctagcggcggtgcgaccgtcgctctctctgtccccgaatcgtcctctctgtctcagctc
actgtctctgagttctccgccctgctgaccttcgtgtcacccggcaacagacagaccaca
gtggccttctgggagatggagtccgggagtgtgagctaccaccaggcggagggcgaggcg
gctccggttcagagctgcggagagcaacatcacacactgctgctgaagaagtccggcgtg
ttccaggtcttgttctccgtgtcccagcaggatttgctcagcaggttgatgttgttcggc
agcgcagcgacagtagacgcagtgtgtcacctgaacagctgggggcgctgctccatcccc
atccacgctctgcaggctggtctgaagaaccgtcagctggacacggtggatttttacctg
aagagtaaagaaaatgttctttacccttcgacagcgttcggatcagctgatgagccagca
gcctccacactcagcctgacagacagtgtgcaggagttgtgtcctgcgttggatctgctc
tgttcagccgtcagagactcacacagtgaagctcagagccgacagttctctgaacagctg
ctcaacatcaccatgagcttcgttaacacgcagatccgctgcgtcctgacaaacacacac
cacaaggacgcaggcgtgcagagctgtgtggacattctggatcgatacgttactgaactg
aggagctacatgaagagattcccctggcctgcagggggcgacacctccagcaccgagact
gctgctcctgctgagaaggaggcccaggaggacgagtgggagcggctgtccacagaggaa
gtggtctgtcagtccatcctgaccaatcagattcccagagctcaggccgtcctgaggagg
cggagccggccggagcagcgtctgtcttctctgaggacggagggtctgcgtcaggtcttc
tcctgcctgcagcagcgagacctgcagaccgccaacatgctccttaccaacatgggtttc
agtgtgaagaagcagctccacagtatctgcctctacactgacgacaaggagctcagggag
tttgtggtggaggagctgctgaggcggagttacttcctggaggaggagatgcagagtgtg
gagttcatcagacagatggagaagctgggctcactgccggcttcccgctgcccagcaaac
gcctcgtcacaaagggttgctcacatggtccgtatggaggcgggaggtgagggcgttttg
aaggagctggtgggacagaggaggtctgaagaggagaaagggctctggaggaatctgaga
ctggactgggtgaggaactggaaccagagcagccagacgtccgtcctcctgtccagactg
cagcacacagagttgacttcctgtgacttggcagtgttgtggcgttacctgaccgccctc
cacgaccagcacagagtgatcgactggatccagcacagcgaagcgtctggcgcctcccgg
tggccggagttaaccccagagctggtcaataacaacaccgtctgcagcagctacatgaag
gagaacatcctggacctgctggccaggagaggtgtgttcatcccagaggagcttgcagac
ctggagcagctgttatggaggctagctcagggcggaggggtcatggcttcgaccccgccc
gtccctcagtaccgctctccgctcggactcgacctccacagcctcttcatctccttctgc
ctggagcgcagcctgcagtacctgctctacgcctacctggagcactacaggttaacaccc
agaaactgccccctgctggtcaatcagagcctgtctgagagtcagccctggtttgagatg
ctggtgaagatccaggagatcaccagagatctgtcagatccaggactcgtcttccaggcc
agtctgaccagcgctcaggtgctgttgccaggcagccaggcgtctctgagcagtctgctg
ttagagggacacagtctgctggctctggctgccatcatgttcacccccggaggaatcgac
caggtggtgcttcagggtgagcggtcgggcaggtcggagaagacggtggaccctcagctc
ctgaagatggcgctggctacgcaccccaaactgaaggctgccctgttcccggccgggcct
cgaggaaacaaccaaccctctgacatctcagtctaccacctgctgcagtcgctcaaccct
ctggacccatccaggctgtttggctggcaggcagcaaacacgctgaactccaccgaaacg
acagagctgccccatttctccagccctcacctggtcaacaagttcgctctggtggagaac
ctggactacctgtactacctccgtcatggccgaccgtccttcgcctacgccaccttcctg
gtccagcagctgagcagctgcagtgacgtcaggctgctgctgcagcaggccttgcagcag
gtgtacaggttggctctgcagtgttttaacgtggcgtccgtggcgtcggcggccgcgtgc
ttctgcgagctgctgggagtctgcagcctcaagctgagagtcgacatcagagccatgaac
gttatcctgcagcactggaaccaactaaacacacacatcactcctgcacagcatctacac
acactggtgtctaaaggtgtaaagttggtggaggcggagcttagagcatcagaggagctg
attggttacctggaagctgcagtgacagacagtctggagcagaaaggcgtcgggaggtcg
tcctacgaggcgtctcaggactgggcgttacctgtacagttctgtcagctccactgtctg
aatctcagctctgtctatccggctcactgcgctgctgacggacagttcatccacttcctg
ttgtttgtgcaactgcacaacttcccaccgcagcaggtgagatcattggctgctgagttt
ggccccgccctccaggcccacctgagtctggccttccaggagctgcaggtgtacagtcag
aggaagggcgatgatgctgaggagcagaccgggtccctgaacacagaggagcacccgtgt
cgcccggagcaccctaaggagcttttccaggtgctcctgcagagtcaggaggaggcggcg
gccagtacgtacctgctgcaggaagcgctggtgcaacgctgcccgacgctggctgtactg
gctgcctgtcaacaggtgccagagctcctgccctgcctgtgcgtatgggtgctcacctcg
gtcgatgacgtcacagcgaaggaagccacctctcacctgcccgaagccccccagtaccat
gagtggaccctgcatgacctgtcaatcatctggaggacgctgctggagcggggccacgtt
agacccctcctacgaggctttgagctcttccagagggactgccctctagtgttggtgttg
aggatgttcgagctgtgttgtgactacaggaacttctccgaggccaaagccaagctgctg
gacttccagaggatgctcatcactctgagaaacagtggcccagccccctccggtggtctc
cccctgcaatgggtggaaagccaagcctcggtgctgctcctcacgatgctgcagcgatgc
tcctcccagtacgacctccaccggctgctgcagctcctggccgacgtcgacaagcacctc
aaatccaacggtccagacttcagaaagctgagtcagctcagtcaggtgctgcaggggtca
gaggtcagcatttctcccaggctgctgcagtgcacttctgcctccgtccagcaggaggag
tttcaggccgccgttgatgctctgcaggccagggggctctacagcaaagccaggcaggtc
gcacagctggccggccttcccatccaccgcctgctgctcagccagcttctccaggaagtg
aactcccagagggccaagcggcagtgggggagattagagacgcgcgtcagtttctggagg
aagtgtcacgagcagctgaaggccgacggcaccgacccagaatcggcctcccagttcttc
ctgtctcaggctgaatccggctcgactcaggccgagacagagcggctagacgtccaggag
cgctgcctcctgctgggcctcgccgctcactggctctccctgcacagcccggctcccgtg
gacaaagtggagagcctggagaagaagctgtggatgagccgggtccgacagcacatcctc
accgtcgccatggagaaggagagcgtttttaacctgccgcctccggccgtcacgcctgaa
atgaacacgtacgaagtgttcatgaaggagttctctttctcgaacatatcagacctgaac
actgagacgtgcctcggtctggaggggctgccgggtccgacggagcagcgacaggaagag
cagaacatcaccggtccagaggagaggaaggttctggctaagctgatcggtcagttatta
gacgaggggagtatccatgaagccagccgggtctgtcgttacttctccctgtatcacccg
gacatgtgggtggtgctgcgctgccgaggtctggcgtctggagaactggaccccgaacca
caagacgaggcgacagaagctccggaaaggaagctcctcaccacctctacctcgttcagc
agcctgtcgtcgttcgtgatgcttcctcttgaagacgacgtcgccatccagctccagaaa
ctggtggatcagtgtcgccacggcaacaactactgcaaacaagtcctcagcctctaccag
ctctccaaggagctgcagtgttccttcagtcagatctgtaaggaggaacctggctctgtg
ttggagaagctgctgctgtctgaccagtcggagcgtttcaggaaggctcaggcgtttatt
aaagctcagagcttctgtgcagacaccgtggctgagctggtttcctctgctgtggttcag
gcgctgctggcctccaaccaggagctgcagccagagaagcaggtgttcaggccgtcggag
ggttgggactcgctgatgcagctcatcaaattgtgtgatgacccgaatctggtgggagtg
aaactgctggaaaacctcaacagtgtcccgctgagagacctgaactgcattgtggagttg
ctgatcgtggctcacgactgtttcagtctcacctgtaacatggagggcatcgtcagggtg
ctgcaagccgcccgtcacctcagccacacctacctggctccaggagagcacttcagcctg
ctggtgcgtctgctgaccggtatcagcagatataatgagatgacctacatcttcgacctg
ctgcatcagaaccatcgatttgagatgctgctgaggaagaaggtggacacggacagagga
cagagctccagtctgaagacggctctgctggactacattaagcgctgcctccctgcagac
agcgagaagcacaacatggtggcgctgtgtttcagcatgaggagggagatcggagaaaac
cacgagatcgccgccaggacgcagctgaagatcatcgagtctcaggactgggttgtgact
cctgagctgaagagttcgttggtgaaggtgttgggtctgctgaaggatgctgcagagagc
ttctccaaggactcgtgtgtgcgtcaggcgagccgctgtgtccggatggctaagctcgtt
gctcttcagctccacttcctgaaccagggatcagacctgcgtgtcatcaacctgcgacct
gcagagatgctgaaagccgtcatggcgctgcctcgatgctaccaggtgtttgtggtgtca
gaggcgtgcagctacagtccagactgggtggagattttgtaccagaaggtgatcctgaac
ggagacttcgcttatctggaggagctcaaacgtcaccggccgctcacctcaagtctgttc
gaggacatcttcaagaagctggacggcgctcccagcagcgtcacccccaacgtgaagcgc
ctgctgactcactgtgacgacgtttacagccgctacagactcgcctaccagcagaacctg
cacgacgtcaccaagacgctgctgcaggacgccaagacctccagctacctgaacgacaag
ctggccagctga
DBGET
integrated database retrieval system
