Scomber japonicus (chub mackerel): 128358642
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Entry
128358642 CDS
T09718
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128358642 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128358642 (edc4)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128358642 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
128358642 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
CelTOS
Motif
Other DBs
NCBI-GeneID:
128358642
NCBI-ProteinID:
XP_053174955
LinkDB
All DBs
Position
5:complement(28988983..29010144)
Genome browser
AA seq
1393 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGSDAQSSNGQRKPSFNGELNGLLGTAGILGDLSTM
SESTRPISTDLSITQETQVICLSGDDGSTCIPITSNNVEIVASQDSGINSKARGSNKVKI
QPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTGAVTD
LAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPDDTPLNLHRRLVWCPFI
QDENEENQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPIDATDLKEGLITVKGYTQRVS
EGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLFFCDNHKRQ
DPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSTVQPSLKASLDLSAEYL
ILTDVQRKVLYVMELRQDLERGKASFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEVLPAE
EESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNASSSSALFLPHSDSQDG
FASFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPTDFLSNLAASSGVMPKLMTPDAFMTP
STSVPASPGSSASSLTIVTAISSNSDSTNRATDDVSQSPNRAENNSSSSLALSTSTNSPR
PASAVLLPGLENLQVLASPSGPLTLDSREIQVLDSPLLPPLASPTRARSPDVISSASTAM
SQDMPEIASQTLQPQRSLVCSLEPLTPLSALQTDSMASAASALHLLTSSRTANNNSLLPL
ELGGAEGPVGGSVDSEPRLSHTPSLLETALSHENPAAGGGSSDGSVSHTPWPAAPDITRE
TRNSLRDNGLADCSREESKDRLLSSPYPRRSYHLTQNDSQDAGAEQSDPDDEVSSLASSS
GNCGSRSSHRLPVKDWKTSPRASPKLKRKPKKDDGESSQSRQMDSGQMNAEVQEELLMLL
RSQQRELTDLRGQIEAMQSSIMTQVEHVLTNHQEQEQRRLERVLVESQNHQQQLQEQLGQ
QLSHTLCSALTNRMDKVLREEMKKTVPPTISKSLEPVTGQLNNTIAAKLTAVEVSLKDNV
SKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGT
QEYIQQLETHVKNRRQREQETRDPMIGQLQQMMDSFQSSTDQLANSITTNVRAEVQHQIQ
MMVGNLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQ
ANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQPVLLSLIQQL
SSNLSTRSELKISYLEDAVMNLDHGDPLTRDHMASMLAQVRPKLFAFLQQDPHSPLTKRA
RRLMMMLQGLVNH
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatcgatattgagggtgcgacccagcaccttcgggacatcctc
aagctcgaccgccccggctccgatgcacaatcgagcaacggtcagagaaagccttctttt
aacggagagctaaatgggttattaggaacggcgggcattttaggcgatctgtcaaccatg
tcagaatccacccggccgatctccacggatctaagcatcactcaggagacccaggtcatc
tgcctctctggcgatgacgggtcgacctgcatccccatcacttccaacaatgtggagatc
gtggcgagccaagactctggcatcaacagcaaagctcgaggcagcaacaaggtgaagatt
caacctgttgccaagtacgactgggagcacaagtattattatgggagactgatagctgtg
tccaactccttcttggcctatgctatcagaggagccaacaaccacgctatgattcgtgtc
ctgagtgtgggttttgctgagcgttccctgctgaagggcttcaccggagccgtcacagac
ctggctttcgcccacctcgactcctccctgttgggctgcgtcgacgaagccggcaacctg
atggtctggcagctcacctgcactggcagcaagatactagatcagatcgtggttcacatc
cgacgaccagacgacacgccgctgaacttgcaccgtcgtctcgtctggtgccctttcatc
caagacgagaacgaggagaaccaggacgacaccagccagacgttggccctcctacatgaa
gacagggctgaggtgtgggaccttgaagtcttgagagccaacaatagcagttggcctatt
gatgccacagatctgaaagaaggtctcatcactgtcaagggatatacgcagcgagtcagt
gaaggtgccctgtctccagatggaaccgtgttagccacagccagccatgatggatacatc
aagttctggcagatatacatagaagggggacaggacaagccaagatgtcttcacgaattg
cgacctcacggaggacgtcccctctcctgccttttcttctgcgacaaccacaagaggcag
gaccccgaggttcctttctggaggtttctgataaccggagcggatcagaaccaggagttg
aagatgtggtgcactgtttcctggacctgtttacagaccatcaggttctctccagatccg
ttcaactcaacagttcagccaagtctgaaggctagtctggacctctccgctgagtatctc
atcctcactgatgtacagaggaaggtcctctatgtgatggagctgcggcaggacctggag
agaggcaaggccagtttcacagctgtgtccgagttcctgctgacccaccctgtgctcagc
ttcggggtccgcgatgtcactcacagccgcttgcgacacactgaggtgctccctgcagag
gaggagagtgagagcatgacaacagagggcactcaaggacccacagagtccaagtctggg
atccagattaaactctactgtgttcacaccaagagtctgcaggatgtccagatctggttc
cagcccaatgcgagttccagctcggcactcttcctgccccactctgattctcaggatggt
tttgcttcgttttcagaccacctgacagaccagagctccgacaaggaatcgggaagcggc
tcccagacagacttgaggaagatcccttcgcttcccgctcccaccgacttcctgtcaaac
ttggccgccagcagcggggtgatgcccaagctgatgactcccgacgccttcatgacacca
agcacttcagtaccggcatcccccggcagcagtgccagcagtctgaccatagtaacagcc
atcagtagcaactctgactcaactaacagagctacggacgacgtcagccagagtcccaac
agagcagagaacaacagcagcagtagtctggcactctccacctccaccaacagcccgaga
cccgcttctgctgtgctgctgcctggactggagaacctgcaggtgctggcgtctcctagc
ggccccctcaccctcgacagcagggagattcaggtcctggactctcccctcctgccacca
ctggcctccccgactcgggcccgctccccagacgtcatctcctcagcctccacagccatg
tcccaggacatgccggagatcgcatcccagaccctgcagcctcagcgcagtctagtgtgc
agcttggagcctttgactcctctttccgctctccagacagacagcatggcgtccgccgcc
tccgccctgcacctgctcacctcgtcgcgcacagccaacaacaacagcctgctgcccctc
gagctcggaggtgcagaaggaccggtcggcgggtcagtagattcagagcccagactcagc
cacaccccatctctgttagagacggccttatcgcacgagaacccagcggcgggaggaggc
tcctcagacggtagcgtcagccacacaccatggccggcagcgcctgacatcaccagggaa
actaggaatagtctgagggataacggtctcgcagactgctcaagagaagagtcgaaggac
agactgctgagttcaccttaccctcgacgatcgtaccacctcacacagaatgacagtcag
gatgccggtgccgagcagagtgacccggacgatgaggtgtccagcttggcgtcgtcctct
gggaactgtggctctcgctcttctcacagactaccagttaaggattggaagacatcacca
cgagcctcgccaaaactgaagagaaagcccaagaaagacgacggtgaatcatcccaatca
aggcaaatggactctggtcagatgaatgcagaggtacaggaagagttgttgatgctcctg
cgcagccagcagagggagttaactgatctgcgtggacagattgaggcaatgcagagctcc
attatgacccaggtggagcacgtcctgaccaaccaccaggaacaagaacagcgcagactg
gagcgagttctggtcgagagtcaaaatcatcagcagcagcttcaggaacaactcggccag
cagctcagccacaccctctgctccgccctcactaacagaatggacaaagtgctaagagag
gaaatgaagaaaaccgttccaccaacaatctctaagagtttggagccagtgactggtcag
ctgaacaacacaatcgctgccaaactgaccgctgtggaggtcagcctgaaggacaatgtc
agcaaggtggttaaatccaagaacacgacagacgcaattggtcgcgcggcagccgaagcg
atgcaggggcccatccaggcagcctataaagacgccttccagagcatcgtgctgcctgtt
ttcgagaggggctgccagtccatgtttcagcaaatcaacgacagctttaaacaagggaca
caagaatacatccagcagctcgagacccacgtcaagaacagaaggcagagggagcaggag
acgcgggaccccatgatcggccagctccagcagatgatggacagcttccagagctccacc
gatcagctggccaacagcatcaccaccaacgtccgggccgaggtccagcatcaaatccag
atgatggtgggaaacttgcaggagtctattcttagccacgtgcagcgcattgtcaaagga
gaggtgagcctggcgatgaaggagcagcaggcggtggtcacctccagcatcatgcaggcg
atgaggtcagcggccggcacgcccgtccccacggcgcacctcgactaccagacgcagcaa
gccaacatcctgcagctcctccagcagggacagctcaaccaggctttccagcaggctctg
tcagccacagatctgaacctggtcctgtacgtgtgcgagaccatcgactctcagcaggtg
ttcggccagcacccctgtcctctgagccagcccgtgctgctgtcgctcatccagcagctc
tcctccaacctctccactcgctccgagctcaaaatcagttacctggaggatgccgtgatg
aatctggaccacggcgaccccctcacaagagaccacatggcctccatgctggcccaggtc
agaccgaagctgtttgccttcctgcagcaggacccccacagcccactcaccaagagggcg
cggcgcctgatgatgatgctgcagggactcgtcaatcactaa
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integrated database retrieval system
