Scomber japonicus (chub mackerel): 128358720
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Entry
128358720 CDS
T09718
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128358720 (ighmbp2)
03012 Translation factors [BR:
sjo03012
]
128358720 (ighmbp2)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128358720 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
128358720 (ighmbp2)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Other ribosome biogenesis factors
128358720 (ighmbp2)
Translation factors [BR:
sjo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128358720 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
nSTAND3
UvrD-helicase
DEAD
Viral_helicase1
Helicase_RecD
AAA_16
AAA_22
IstB_IS21
ResIII
SLFN-g3_helicase
PhoH
AAA
AAA_25
HEM4
Zot
ABC_tran
NPHP3_N
SRP54
SpoIIAA-like
Flavi_DEAD
ATPase
Motif
Other DBs
NCBI-GeneID:
128358720
NCBI-ProteinID:
XP_053175059
LinkDB
All DBs
Position
5:11704998..11710521
Genome browser
AA seq
1031 aa
AA seq
DB search
MMTVEQFVSKTLELLQEEREAEIDETRVWQENISPKDLQNKGVCLLKLQIGSQSTGLYGR
TVVVLEPRKHLGFLSLPSNSFGPGDIVGLYDSGGCTAASQVGTGIVTRVTQAAVSVAFDN
AKDELSVDTDALYNLLKLANDVTYKRMKHALNALNGHCNGPVANLINVLFGESKPSSHAQ
PNKVEFLNSNLDESQREAVSFALAQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKILCC
AGSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILANSDNANILADIRKDID
KAFMGMKKKSEKGERMNFRREVGELRKELKTREATAIAQILKKADVVLSTNTGACDNGPL
KYLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQKAASKGLSLS
LMERLIQMYGDSVVRMLTVQYRMNSAIMEWASKEMYQGRLTAHSSVERHLLKDLPGVTCV
EETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPY
NLQVDLLRQKLSSRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAV
TRARRHIAVVCDTQTVQNHAFLKSLINHMTEFGEVRTAFEYIQDIVPQNYVRDHKDTKPS
TSASSSTSAKQKVRDQPPSKTKQGQKKSTGSSSKEDNKKQDKQTKSSTSTMTEEEQNKSR
SAEIRQQVESFLKDFNQSELLFPSSFNSHDRLLVHEIAEEMGLVHESKGEGKDRCITVSR
PAEEPTQAKEEEEEEEEGEEEAATQEEETTPNPQKAPLCQPPLDLKSLHLERMKREQQKR
EENAQHKKQQNNIPLAQAQSSKKAKSKGLQYKHLFCVCFVKHLSDIFLTSNCCHSPPGKN
RTKAGACDIAAAAAADDDFDSLISAVMKAESVCSFVKCKASVLTLGQLCIFCNRQYCLSH
HIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSMDPNKKAYLQRKLDSKLKDMATQR
KVKSKEKDSQQ
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgatgacagttgaacagtttgtgtcgaagacgcttgagcttcttcaagaggaaagggag
gctgaaatagatgaaaccagggtatggcaggaaaacatctctccgaaggatcttcaaaat
aaaggagtatgtctgttgaaactgcagataggaagtcagtccacaggcctgtatggacgc
acagttgtcgtcctagagccaagaaagcatcttggttttttatctcttccgagcaacagc
tttggacctggggacatagttggcctgtatgacagtggtggatgcactgcagcctctcag
gttggcacagggatagtgacgagagtcacccaggcagctgtaagtgtggcctttgacaac
gcaaaggatgagctcagtgttgatacagatgctctttacaatctcctgaagttggcaaat
gatgtgacttacaaacgaatgaaacatgccttgaatgcattaaatggacactgcaatgga
ccagttgcaaatttgataaatgttctcttcggagaatcaaaaccctcatctcatgcacag
ccaaataaagtggaattcttaaactcaaacctggatgagtcccagagagaggctgtgtcc
tttgctctggctcagagagaactggctgtgattcatggaccaccaggcactgggaaaacc
accacagtggtggagatcattctgcaagccgtcaaacaaggccaaaagatcctgtgctgt
gccggctctaacgtggctgtggataatttagtggagaggttagcccgatgcaaggcaaag
gttctgaggctgggtcatcctgccagactgctggagtccatacagaaacactcactggat
gccatcctcgctaacagtgacaacgcaaacatcctagctgacatccgtaaagacatcgac
aaggcttttatgggaatgaagaaaaagagtgaaaaaggagagcggatgaacttcagaagg
gaagtaggagagctaagaaaggagctgaaaaccagggaagcaacagccatcgcccagatc
ctgaaaaaagctgacgttgtcttatcaaccaacacaggtgcttgtgataatggccctctg
aagtacctgccagcagagcattttgattgggtggtgatagacgagtgcgctcaggccctg
gaaagcagctgctggatcgccctgctcagagcacgcaagtgtatactggcaggagactac
aagcagctaccacctactatcaaatcacaaaaggctgcatcaaaaggcttgtctcttagt
cttatggagaggctcatccagatgtacggggactcagtggtccgaatgctaacagtacag
taccgcatgaacagtgccatcatggaatgggcatccaaagagatgtaccagggaagacta
acagctcacagctcagtggagagacacttgttaaaagatctaccgggagtcacctgtgtt
gaagagaccagcacaccacttcttctgattgatacagcaggctgtggtttgagtgaaatg
gaggtcactgatgagcagtccaaaggcaatcaaggtgaggttgacattgttgaactacac
ataaaggccttgaccgaagctggggttaaagctaaagacatagctgttattgcaccgtac
aatttacaagttgatcttctgcgtcagaaactttcctcaaggcatccagagctagagatc
aagtcagtggatggatttcagggcagagagaaagaagctgtggtgctatcattggttcgg
tccaacaggaaaggtgaggttggatttctggcagaggacagaaggataaatgtggctgtt
acacgtgcgagacgtcacattgctgtggtgtgcgacacccaaacagttcagaatcatgct
ttcctgaaatccctaatcaatcatatgactgaattcggcgaagtcagaacagcttttgag
tacatccaggacatcgtaccacaaaactacgtccgtgatcacaaagacacaaagcccagt
acatctgccagcagctccacgtcggctaaacagaaggtcagagatcagcctcccagcaaa
acaaaacaaggccagaagaaatccactggtagcagcagtaaggaagataataagaagcaa
gataagcaaacaaagtcgagcacatccacaatgacagaagaggaacagaacaagagcaga
tccgctgagatcagacagcaggtggagagctttctgaaggatttcaatcagagtgagcta
ctgtttccatcatcgtttaactcgcatgaccgcctgctggtccacgagatcgctgaggag
atgggccttgtgcatgagagcaaaggagaagggaaagacaggtgtatcactgtctcaaga
ccagctgaggaaccaacacaagcaaaggaagaggaggaagaggaagaagaaggagaagaa
gaagcggcaactcaggaagaggaaactaccccaaatccccaaaaagctccgttgtgtcag
cccccattagatttgaaaagtttacatttggagcgaatgaagagggaacaacagaaaagg
gaagaaaacgctcaacataaaaagcaacagaacaacatcccactagctcaagcacaatct
tcaaagaaggccaagtctaaaggtttgcagtacaaacatctattttgtgtctgctttgtg
aaacatttgtcagatatctttttaacaagtaactgttgtcattcccctccagggaagaac
cgaaccaaggcaggcgcatgtgacattgctgccgccgccgctgcagacgacgacttcgac
tcacttatcagcgctgtcatgaaggctgaaagtgtgtgtagctttgtcaagtgtaaagcc
tctgtgctgaccctcggacagctctgcatcttttgcaacaggcagtattgtctcagtcat
cacataccagaggttcatggttgtggggataaagccaagtctcatgctcggatgagaata
agcaaggagggtgttctttatgctggcagcgggaagaaagacaaatccatggaccccaat
aagaaagcctatctgcaaaggaagctggactctaaactgaaagatatggccacacagagg
aaagtaaaaagcaaagagaaggatagtcaacaataa
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