Scomber japonicus (chub mackerel): 128358754
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Entry
128358754 CDS
T09718
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4-like
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
128358754
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
128358754
Domain-containing proteins not elsewhere classified [BR:
sjo04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
128358754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
ADAMTS_CR_3
TSP1_spondin
PLAC
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
128358754
NCBI-ProteinID:
XP_053175114
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All DBs
Position
1:11005545..11043614
Genome browser
AA seq
971 aa
AA seq
DB search
MQQNCVWTIRVSVLLLLLWPDPLDCQHTTDHRKVPQRAEPQQEFRAEHGEIQGSWGSWGS
WGPWSTCSRTCGGGVQEQSRHCLPVYTPPQYPSVRAGIHHHQPGHVISALRPTVPLHRDT
VRSSNSSSSRGELGRTRPGGRRRVSHISPGRYGYGRAPYVAPLQTEADQSSGMTRPHRQR
RSAAADAHQLTAGGHGGHRSNNLDPSNNLRHYSRPYMQPINNQIWAPLYQPGSAHQTEVQ
QEVPSGGQTSGPQQHQERPYNPLPTSHCTGEQAHYQVCNSNACPPFSRHIRAVQCSSYNN
QPFMGRLYEWEPFNEVSEDQHCELNCRAVGFRFYVRQSEKVIDGTPCGQNDTSLCVVGKC
TSLGCDEYLGSGKVMDKCGVCGGDNTTCRLVSGVFKHTLSKIGYHKIVEIPEGATRINVT
EMVKSRNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYRRPNEIRSTAGESLLAEGP
TNEILDVYMIFQQPNPGVHYEYILPSENPVHPQQPNHRPEGNAVNGQSGSDHHSNPHQEN
FNPAGEGRYPPPLPDNQVPVVEPPRREREYNWKLAGATECSASCGKGFRHSIFHCVHRLN
HVQVSDTLCDSSTRPTPQEEPCNLQPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYAN
RTLNVHTSRCQHLERPETASTCQLKICSEWQIRSEWTACSVPCGLGQRSRDVHCVSNVGD
VVLDEECNMNLRPIDVENCDMGPCAKSWFYTEWGNRCSAECGMGVRTRGILCLTNHIGSL
PLEGCGNERPADSQVCNNGPCENRIEWYTGPWNQCSAECGAGSQQRSVVCLMKSESEEGF
TVMPPYECSSLDRPLSQQSCNLKACGAKWYHTDWSACSKTCEGGFRVREVRCLSDDMLSS
EDCDEKMKLTEKEDCNPEPCIPHIDENCRDKYFNCNVVVQARLCVYDYYKTTCCASCSRV
AHRQPIHRARS
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaactgtgtctggactatcagagtttctgtgctgctgctgttgctttggccg
gaccccctagactgccaacacacaacagaccacaggaaggttcctcagagggcagagccc
caacaggagttcagggcagagcatggagaaattcagggctcctggggctcctggggttcc
tggggtccctggtcaacctgttcccggacctgtggaggaggagtacaagagcagagcagg
cactgcctacctgtttacactccacctcaatacccttctgtaagagcaggcattcaccac
caccagcctggccatgtcatttcagccctgcggcccacagttcctctgcaccgtgacaca
gtcaggtcctccaacagcagcagcagccgtggagagctggggagaaccaggcctggtgga
cgcaggagggtcagtcacatcagtccagggaggtacggctatgggagagcaccttatgtt
gctccgttgcagacggaggcggaccagagctctgggatgactcgcccccacagacagaga
cgctctgctgcggcagatgcccatcaactcactgctggaggccacggtggccacaggtca
aacaacctggatccctccaacaacctccgccactacagccgaccctacatgcagcccata
aataaccaaatctgggcccccctctaccagcctggctcagcccaccagactgaggtacag
caggaggtaccatcaggtggccagacctctggacctcagcagcaccaagagagaccatac
aaccccctgcccacttcccactgtacaggagagcaggctcactaccaagtctgcaacagt
aatgcctgtcctccattcagcagacacatcagggctgttcagtgttcttcatacaacaac
cagcctttcatgggcagactgtacgagtgggagcctttcaatgaggttagtgaagatcag
cactgtgaactcaactgccgggccgtaggcttcaggttctacgtgcgacagtcagaaaag
gtgatcgatgggacgccctgcggacagaacgatacctctctctgtgtggtgggaaagtgt
acgagtctaggctgcgatgagtatcttggatcaggaaaggtgatggacaagtgcggcgtg
tgtggaggcgataacacaacctgcaggctggtctccggagtcttcaaacacactctgtcc
aagatcggctaccacaagatagtggagatcccagagggagccaccaggatcaacgtcaca
gagatggtgaagagccgaaactacctagctctccgaagccgatcgggacgatccatcatt
aatggaaactgggctattgaccggccagggaagtatgagggaggggggaccatgttcact
taccgcaggcccaatgaaatccgtagtacagccggggagtccttacttgctgaagggccc
accaatgagatcctggatgtttatatgatcttccagcagccaaaccctggtgttcactac
gagtacattctgccttctgagaatccagtccaccctcagcaaccaaaccacagaccagaa
gggaatgctgtgaatggacagagtggatccgaccatcacagcaatccgcaccaggaaaac
ttcaacccagcaggtgaggggaggtaccctcctcctctccccgacaaccaggtacctgtc
gttgagccacccagacgtgagagagagtacaactggaaactggctggtgctacagagtgc
agtgcctcctgtggtaaaggtttcagacactccatctttcattgcgtccaccggctgaac
catgtccaggtttcagatactttgtgtgacagcagcaccagaccaactccacaggaggag
ccctgcaacctgcagccctgcccggcattctgggatattggagagtggtcagaatgcagt
aagacctgtggcctggggatgcagcaccggcaggtactgtgtcgccaggtttatgcaaac
cgcaccctcaatgttcacacaagtcgctgccaacacctggagcggcccgaaaccgccagt
acctgccagctgaagatctgcagtgagtggcagatccgctccgagtggaccgcatgctcg
gtgccatgtgggctgggtcaaaggtcacgggatgttcactgtgtcagcaatgtgggtgac
gttgttcttgatgaggagtgcaacatgaatctgcggcccattgacgtagagaactgtgac
atgggaccctgtgcgaagagctggttctacactgagtggggcaataggtgctctgctgag
tgtgggatgggtgtacggacccgaggaatcctctgcttgaccaaccacatcggcagcctt
cctctggaggggtgtggcaacgagcggcctgcagactctcaggtctgcaacaacggcccc
tgtgagaatcgcattgagtggtacacaggcccctggaaccagtgttctgcagagtgcggc
gcaggcagccagcagaggtcggtggtgtgtctgatgaaatcagaatcagaggaaggattc
acagtcatgccaccatatgagtgttcgtccctggaccggcccctcagtcagcagagctgc
aacctcaaggcctgtggagcaaagtggtaccacactgactggagtgcttgttcaaaaaca
tgtgaaggaggtttccgtgtacgggaggtgcgctgcctgtctgatgacatgctttccagt
gaggactgtgacgagaagatgaaactaacagagaaggaagactgcaacccggagccttgc
atacctcacatagatgagaactgcagagacaagtacttcaactgcaatgtagtggtccag
gctcgcctctgtgtgtacgattactacaagactacatgctgcgcttcatgttcgcgagtg
gcccacagacagccgatccatcgggcccgcagctaa
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