Scomber japonicus (chub mackerel): 128358765
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Entry
128358765 CDS
T09718
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128358765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128358765
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
128358765
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
HECT type E3
128358765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
128358765
NCBI-ProteinID:
XP_053175124
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All DBs
Position
5:complement(29467739..29476493)
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AA seq
1002 aa
AA seq
DB search
MYSWGEDSQGGFLVKDGSGAAGDGVYFLKLNFHIKDLSAGHSVLACVKSDGSAFIIHTNE
SNDGRRMRGKQKFVKHKEKIQAVSCSDDMVTLLSQTGKVLCVGPVHTSPIPRTPEALCNI
PVSQVACGSQHSIALTKDGQVYTWGQDSRGQLGLGNIKIDANSPQLLQSLSSIPLVQIAA
GGEQSFALSVSGGVFSWGRNDCGQLGLGDTTDRHTPTPVHSLDTKKTIHISCGKDHTAIL
TKHGVVFTFGSSQYGQLGHNSFSEELRPRIVAELWGAKVIKIACGRHHTLVMTDSKRVYS
FGCGEQGQLGHGEESHPSVPLPVQLPQGAADVSQIQNIYAGGNCSFAMCSSNKDVHKGSN
SDSMNKVHHCLEGLIDRWTSEHDSKSWKKIKQEIKRTFSSASCLNQSFLDQSNDKHFQTS
QKFSGLNLSVARLAFQKLVQKDDVWEKVEAAVTQLIPSLYEKPVGVEGLRIYLLLIELLH
VIQKHKQQQGTHLAELVAAAVVRLSADNLQVIVGWWCSLWPSTKIKHVKVWKRALAPILS
SFPVPRDSGVKNLLLVLRHMYNANNRTEGCQRIPDETFCMGVNQVLLQEDLKVWRSMPRN
KPHIMCNFPFVMDLKSKIIAFDTDAGWTQGQQQQLVWTVFGWVAQANPRFFELKLKRASL
MEGTFKQLAAAHSSALKKPFVVYFDEEPKVTDVYKRDFFHHLFHNMVSTKSGMFMFNDSN
TLAWFPSKATEEDKTNFFLFGRLCGLALYNQSIIHLPFPLALFKKLLDVEPSLEDMLEFS
PRVGKSLQDILDYEDNVIESLDLDFLIDWDGTEVDLDPQNPRKPVTCQNKKEFVDAYVNH
AFNTSVEGVFQEFRRGFFQVCDQRMVKLFRPHELQGLLVGQDVYDWAKLKQNTVYEMVYH
GGHPNILMFWEVFDELTEELRKDFLWFLTGFRRAPILGMENVQMKIRVKEVLGTSSDQLF
PESLTCHSILELPLYSTKEIMQEKLKEALITERGFSDLPQIH
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgtattcctggggagaggacagtcaggggggctttcttgtgaaagacggctccggtgca
gcaggtgatggagtttactttttgaagctcaattttcacatcaaggatctgtcagcaggt
catagtgtgctcgcttgcgtcaaaagtgatggaagcgcgttcattatccacacaaacgag
agtaacgatggaagacgaatgagaggaaaacagaagtttgtgaaacacaaagagaagatt
caggcagtgagttgcagtgatgacatggtcacactgctgtctcagaccggcaaagttctc
tgtgtgggcccagttcacacttcacccattcccaggactccagaagctttgtgtaacata
ccagtatctcaggttgcttgtgggagccagcattcaatcgctctgaccaaagatggtcag
gtgtacacatggggccaggactccagaggccagctgggtctgggaaacattaagattgat
gccaattcaccccaactcctccagtctctgtcatcgatccccctggtccagattgctgca
gggggggagcagagctttgccctctctgtctctggaggggtgttcagctggggcagaaat
gactgtggacagcttgggttgggagacactacagacagacacacaccaacccctgttcat
tctttggacacgaagaaaactattcacatctcctgtggaaaggaccacactgccatttta
acaaagcatggtgtagtgtttacatttggctccagtcagtatggacagcttggacacaac
tcattcagtgaggaactacgtcctcgtattgttgcagagctctggggggccaaggtcatc
aagattgcatgtggacgacatcacacattagtgatgacagactccaagagagtctactcc
tttgggtgtggagagcaaggccagctgggacatggagaggagagtcatccatctgtgccg
ctgcctgttcagctaccacaaggtgctgctgatgtttcacaaattcagaacatctacgca
ggaggaaactgctcatttgcaatgtgctcctctaataaggatgttcacaaagggtcaaac
agtgacagtatgaacaaggttcatcactgtcttgaaggtttaattgacagatggacctct
gaacatgattcaaagtcatggaaaaaaatcaaacaggaaatcaaaaggacattttcctct
gcatcctgcctgaatcaaagcttccttgatcaaagcaatgataaacatttccagacctca
caaaagttctccggcttgaacttgtcagttgctcgacttgctttccagaaactggtacag
aaggatgatgtttgggaaaaggttgaggctgctgtcacacagttgatcccctctctttat
gagaaaccagtaggagtggaggggctgaggatctatctgctactcattgagcttctgcat
gtgatccagaaacacaaacagcaacagggcacacaccttgctgagttggtcgctgctgct
gtagtaagactgtctgctgacaacctccaagtcatagtgggctggtggtgctcactgtgg
ccctccactaagattaaacatgtcaaagtgtggaagcgggccctcgcacctatcctgtcc
tccttccctgttcctcgtgactctggagtcaagaacctgctactggtcctccgacatatg
tacaatgccaacaacaggactgaaggatgtcagaggatcccagatgaaactttttgtatg
ggggttaaccaagtacttcttcaagaggatctgaaagtttggcgttcaatgccaagaaac
aagccacatatcatgtgtaacttcccatttgtgatggatctgaaatcaaagataatagct
tttgacactgatgctggttggacacaggggcaacaacagcagttggtttggacggtcttt
ggatgggttgctcaggcaaatcctcgcttctttgaactgaagctgaagcgtgcgtcactc
atggaaggcaccttcaaacaactagctgctgctcattccagcgccctcaagaaaccattt
gtggtctattttgatgaggaaccaaaggtcacagatgtctacaaaagagacttttttcat
cacttgtttcataacatggtgtcaactaaatctgggatgttcatgttcaatgactccaat
acactggcctggttcccctccaaggcaacagaggaggacaagacaaacttctttctgttt
ggacgtttgtgtggattggccttgtacaaccagagtatcatacatttacccttcccactg
gcactgttcaagaaactgcttgatgtagagccttcactggaggacatgttagagttcagc
ccaagagttggaaagagtctgcaggacatcttggactatgaagacaatgtcatagaaagc
cttgacttggattttctgattgactgggatgggacagaggttgaccttgatccccaaaat
ccaagaaagcctgtgacatgtcaaaacaagaaggagtttgtggatgcctacgtgaatcat
gccttcaacacgtcagtggaaggtgtgtttcaggagttcaggcgaggcttcttccaggtg
tgtgaccagcgtatggtgaaactgttccggccacatgagctgcagggactcctggtgggc
caagatgtgtacgactgggcaaaactgaaacagaacacagtctatgaaatggtctatcat
ggtggtcaccccaacatactgatgttttgggaggtttttgatgaactgacagaagaactg
aggaaagatttcctttggttcctgaccggttttaggagggctcctattcttggaatggaa
aatgtccagatgaaaattcgagttaaggaagtcctaggcacctccagcgatcagctcttc
cctgagtcactcacatgtcactctattctggagttgcccttatactcaaccaaggagatc
atgcaagagaagctgaaagaggctctgataacagagagaggattctcagatcttcctcag
attcactga
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