Scomber japonicus (chub mackerel): 128358781
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Entry
128358781 CDS
T09718
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128358781 (lingo1b)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
128358781 (lingo1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
Ig_2
LRR_Zer-1
LRR_9
LRR_RPS2
LRRNT
Ig_C17orf99
LRR_LRWD1
V-set
Motif
Other DBs
NCBI-GeneID:
128358781
NCBI-ProteinID:
XP_053175145
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Position
1:32580703..32582656
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AA seq
622 aa
AA seq
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MSPQVSSRMVSGEAGGHSYLVACWQPILILMLGTVLSGSTTGCPSRCDCNAQERSVVCHR
RRLAALPEGIPTETKLLDLSKNRLKTLGPEEFINYPQLEELQLNENIISSIEPGAFSNLL
NLRTLGLRNNQLKLIQLGVFTGLTNLTQLDISENKIVILLDYMFQELYNLRALEVGDNDL
VFISPRSFHGLSNLESLNIEGCNLASVPTDALSHLHNLLSLQLRYLNVTVIRDYSFKRLY
RLRVLEISHMPALDTMTQNCLFGLNLTSLSITNCNLTVIPYQAISHLRHLRFLNLSFNPI
HTVEGNQLYNLQKLQAFHLAGGRLAAIEPYSFRGLNHLRILNVSSNSLSTLEESVFHSVG
NLETLALYDNPLACDCRLLWVFRRRWRLNFNRQQPICASPEVVQGKEFKDFPDIPSGYFI
CEKSKIMNNKVEESHVDEGTTVHFACQAEGDPVPVIMWLSPKKEYITTKTVGSRLSVSKE
GTLEVRYAQIKDNGSYWCIASNAAGNDTKAAHLFVHSYSPNWPHQPNKTFAFISNQPSDE
GANVTRATVPFPFDVKTLIIATTMGFISFLGVVLFCLVILFLWSRGKDSAKSSIEVEYVP
RKEETEEASPNEAPVQFNMKIM
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaggtaagcagtaggatggtgtctggggaggcaggagggcacagctacttg
gtggcatgctggcagcccatcctgatcctgatgctgggcactgtcctctctggctccacc
accggttgcccctcccgatgtgactgtaatgctcaggagcgttcggtcgtgtgccatcga
cggaggctggctgctcttcctgagggcatacccactgaaacaaagcttctggacctcagc
aagaaccgtctgaaaactctggggcctgaggagttcattaattatcctcagctggaagaa
cttcaactcaatgaaaacattatttcatccattgagcctggggcttttagcaaccttttg
aacctccgaactctaggtttgcgcaacaaccagctgaaactcattcagctgggggtgttc
acaggcctgaccaacctcacccagctggatattagtgagaacaaaatagtaattctgctc
gattacatgttccaggagctatataacctgagggctctagaggttggtgacaatgaccta
gtattcatatcaccacgatcgtttcatggcctcagcaaccttgaaagtctcaacattgag
ggatgcaatctggcctcagtgcccactgacgcccttagccatctgcataacctattgtca
cttcaattacgctacctgaacgtcactgtcatacgggattattcctttaagagactgtat
aggctgagagtactggagatttctcatatgcctgccctggataccatgacccaaaactgc
ttgtttggactcaacctcacatcattgtcgatcacaaactgtaatcttactgttatcccg
taccaagccatcagtcacctaagacatcttcgctttctgaacctgtctttcaatcccatt
catactgtggaaggaaaccaactgtacaatctacaaaagctccaggcttttcacctggct
ggtgggagattagcagccattgagccctactctttccgaggactcaatcaccttcgtatt
ctcaatgtatccagcaatagcttgagcaccctggaagagtccgtcttccactcagtggga
aatctggagaccctggctttgtatgacaaccctttggcctgtgactgtcgcttgctctgg
gtcttccgccggcggtggaggcttaacttcaacagacagcagcccatatgtgcttcacct
gaagttgtgcaaggaaaggagttcaaggacttcccagacatcccctctggctatttcatc
tgcgagaagtcaaagattatgaacaacaaggttgaagaaagccatgtggatgaagggact
acggtccattttgcttgccaagctgagggtgatccagtcccagtgataatgtggctttcc
cctaagaaggaatacattactaccaaaactgtggggtcaagactttctgtgtctaaggag
ggcacattggaggtgcgttacgcccaaatcaaggataacggttcttattggtgcattgca
agcaatgcagcaggcaatgacaccaaagctgctcacctttttgtgcatagctattccccc
aattggccccatcagccaaacaagacatttgccttcatttccaaccagcccagcgatgaa
ggtgctaatgtgacccgggccacagttccctttccatttgatgtaaagacacttattatt
gcgaccaccatgggatttatctctttcctcggagtcgtcctcttctgtcttgtaattctg
ttcctctggagtagagggaaagacagtgctaagtcaagtatagaggttgaatatgtgcca
cgtaaagaggaaacagaggaggccagtccaaatgaggcacccgtacaattcaacatgaaa
attatgtga
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