Scomber japonicus (chub mackerel): 128358904
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Entry
128358904 CDS
T09718
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128358904 (lrrc4ca)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
ig
Ig_3
V-set
Ig_2
LRR_14
LRR_9
LRRNT
LRR_NXF1-5
DUF7617
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
128358904
NCBI-ProteinID:
XP_053175277
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Position
5:complement(22293533..22295479)
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AA seq
648 aa
AA seq
DB search
MLNKMTSSQQQQMMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLSIIRPGSF
KGLIHLQKLWMMHAQIQIIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTHHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNDIITTTVQQKVGP
TPSAGIWESVSPTSTTTTTVRTPLSTRATEKTYTVPVTELGGEGSLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPP
LEHEHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctcctctcagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttgtttgtgctgctcctggccctccagctgctggtggtggca
gggttggtacgtgctcagacgtgcccctctgtctgctcctgtagtaaccagttcagcaaa
gtcatatgcacgcgccggggcctgcgagatgtccctgatggaatctctaccaacacacgc
tacctgaatctgcaagaaaatctcattcaggtcatcaaagtggacagcttcaagcaccta
agacatttagagatcctgcagctgagtaaaaaccacatacgcaaaattgagctgggggcc
ttcaatggactggccagcctcaataccttggagctttttgataaccgcctcacaaccatc
ccaaatggagcatttgagtacctgtctaaactaaaggagctttggttgaggaataacccc
atagagagcattccctcctatgctttcaacagagtgccctcattacgacggttggacctt
ggggagctcaaacggctctcctacatatctgagggggcctttgaagggctgagcaatctg
cgctacttaaatctgggaatgtgcaatcttaaagaaattcccaatcttattcccctggtg
aagctggatgaactggaaatgtcggggaaccagctatccatcatccggcctggctccttt
aaagggctcatccatttacagaagctatggatgatgcatgcccagattcagatcatagaa
aggaactcttttgatgatctgcagtcactagttgagcttaatttagcccacaacaacctt
accctcttgccccatgatctgttcactcctttgcatcacctggagagggtgcacttgcac
cacaacccgtggaattgtaactgtgacatcctctggttaagttggtggcttaaggagatg
gtaccagcaaacaccagctgctgtgcccgttgcagctcaccaactcaccataaagggcga
tacattggcgagctggaccagaactactttcactgttatgctcctgttattgtggagcca
cctgctgacctaaatgtgacagagggaagtgctgcagagttgaaatgtagagccagttct
ttgacatcagtaagctggattacacccaatggttctatcatgacacacggtgcatacaag
gtcagaatctcagtgctgaatgatggcactctgaacttcaccaatgtcaccatgcaggac
acgggcacatacacatgtatggtcagtaattctgcaggtaacacaactgcatccgccacg
ctcaatgtgtcctctacggagaacagcagcttcagctacttcactacagtgacagtagag
accatagaaacaccacataatgacatcatcaccaccactgtgcaacagaaggtggggcca
accccatctgctggtatatgggaatctgtttcacccacctctacaactaccacaacagtc
agaaccccactttccacccgtgccacagagaagacatacacagtccctgtgacagagctg
ggtggggagggctcactgaatggcttggatgaagtcatgaagacaaccaagatcatcatt
ggctgctttgttgcaatcacactaatggcagctgtcatgctgatcatcttctacaagatg
cgtaagcagcaccaccagcagaaccaccatgcacccacgcgcaccattgagatcatcaat
gtggatgaggattgtgtaacaggaggcccgggcatggagggccacctgacactgcctcct
cttgagcatgagcacctcaaccactataacacttataagactgcatacaaccatgcctct
actatcaactccatacacagctcagcgcacgaacctttgttaatccgggccagctcaaaa
gacaatgtacaagagacccaaatctaa
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