Scomber japonicus (chub mackerel): 128358929
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Entry
128358929 CDS
T09718
Symbol
cdhr5b
Name
(RefSeq) cadherin-related family member 5
KO
K16505
cadherin-related family member 5
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128358929 (cdhr5b)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Cadherin related
128358929 (cdhr5b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_3
TMEM154
Motif
Other DBs
NCBI-GeneID:
128358929
NCBI-ProteinID:
XP_053175306
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Position
5:670560..681692
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AA seq
740 aa
AA seq
DB search
MDGIHPPFTVRTSISFLLLVLLQTSKAQDICSAPQSVNFNENNDPNALVTTITVEPGVTL
AFKPPEDPDNPFVLEGNQLKASRALDYETEKTLTVSIDCLETATDLKLGLVIIVVLQNLN
DNGPQFAENPYNVDFNEMSPVGTTVGRFAATDLDNLGPLYYTLTSATNDFVLASPTTPDI
IVNTLLDFDKVKSFNLVLTSQDTPLGSADILSFTATTTIMVTIVDVDNRPPWFQPCTKYE
VGSATVCQSSGYTGVVNLNEQEPGVLPLKPGRLHAIDGDSLNEEITYSFLSGNEDGLFKI
NSDTGDITMVKAAEVLGTITLTVLAAQKISSYQFATTSVTVSVHVKSLHPPEFEKTRYEA
VVSSEGTMAVDPTNNVPVRIIAKDKDYAATGDINPHIKYSIKGSNNFSITDGYLFMINEV
PDGELSLEVVAEDTTNDESATAELVVDVKTGLTTTSLPPSTTTEESTTVGKTTKDIVSST
VGKTTADFGSTTDSITTALPSTTTESTATESTTSKTNHDFSVGDMAALGASLGVLLFVCL
VVIGVLARCIQKWKTDCRKISEASMFQRTLSQGSIGKKGGTPYTNMAYLNDKDGGSTGSD
NPDGGSIKVGEEPLYENSLLRESSAPVKSPQHDDGSLTGSEYTDSEKEVKPILTKERRME
EGYKSVWFKEDIDPNAKEEVVIIPDSREDDSEEEDDEDEDTDRPVKKVVFAEADLDSGLG
VKIEDPAQDSDDDDMVTEHL
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggacgggattcatccacccttcactgtgaggacgtccatcagctttctgcttctcgtt
ctgcttcaaacgtctaaagctcaggacatctgtagtgctcctcaatctgtgaacttcaat
gaaaacaatgatccgaatgctctcgtgacgaccatcactgtggagccgggggtcacgctc
gccttcaaaccacctgaagaccctgacaacccatttgtactcgaaggaaaccagctgaaa
gctagtagagcattagactacgagactgagaaaactcttacagtcagcatcgactgcctt
gagacagccacggacctcaagttggggttagtcattattgtagtacttcaaaacttgaac
gataacgggccacaatttgctgaaaacccctacaatgtggacttcaacgagatgtctcca
gtgggcacaactgtgggccggtttgctgccacagatttggataatttgggtccgctctac
tacacactgacatctgccactaatgactttgttctggcgtcaccgacgaccccggacatc
attgtaaacactcttcttgacttcgacaaagtcaaaagtttcaatttggtgttgacctct
caggacacaccgttaggctcagcggatattctctcgttcactgccaccaccaccatcatg
gtcactattgtagatgtggacaacagaccaccatggtttcagccctgcaccaagtatgag
gtggggagcgctacggtctgccagagttctggctacactggcgtggtcaacttaaacgaa
caagagcccggagtgttaccactgaaaccaggacggcttcatgccatcgacggtgactcg
ctaaatgaggagataacatactccttcctgagtggaaatgaggacggtctgtttaagatc
aactcggacacaggagacatcaccatggtgaaggcggctgaggtgttggggacaatcact
ctgacagtgctggctgctcagaagattagcagttatcagtttgccaccaccagtgtgaca
gtcagtgttcatgtgaagagcctccatcctccagagtttgagaagactcggtatgaagcc
gttgtctcttcagaaggaaccatggcagtggacccaaccaacaatgttccagtgcggatt
atcgccaaagataaggactatgctgctactggggatataaatcctcacatcaagtactcc
attaagggaagcaataacttctccatcactgacggttacttattcatgataaacgaagtc
ccagacggcgaattatctctggaagtggtggcagaagacacgaccaacgatgaatcagcc
acagctgagctcgttgtggacgtgaaaacaggtctcaccaccaccagtttgcctccaagc
actacaacagaggaatccaccaccgtcggcaagacaacgaaagatattgtgtcctccacg
gtcggcaagacaacagcagattttgggtccactaccgacagcatcacaactgccctcccc
agcacaaccactgaaagcacagccactgaaagcacaacctccaagaccaaccacgacttt
agtgtgggggacatggcagcgctcggtgcgtctctgggtgtcctgctgttcgtgtgtctg
gtggtcatcggtgtgctggcccgctgcattcagaagtggaaaacagactgtaggaagatc
tccgaagccagcatgtttcaacgcactctgagtcaaggttcaattggtaaaaagggagga
accccttacaccaacatggcctacctgaacgataaagatggaggcagcacaggctcagat
aatccagatggaggaagcataaaggttggcgaagagcccctgtatgagaacagcctgctc
agagagtcttcagcaccggttaaaagcccacagcacgacgacggcagcctgacgggatct
gaatatacggacagcgagaaggaggtgaaacccatcctgaccaaggagaggcgcatggag
gaggggtacaaatcggtctggtttaaggaggacattgaccccaatgctaaggaggaagtg
gtcatcatcccagacagcagagaggacgacagcgaggaggaagatgacgaggatgaagac
acggacaggccagttaaaaaggttgtctttgctgaggcagatctagatagtggactcggg
gtaaagatagaggatccagcacaggactcagatgatgacgacatggtgactgaacatctg
tga
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