Scomber japonicus (chub mackerel): 128358970
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Entry
128358970 CDS
T09718
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128358970 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sjo03021
]
128358970 (sf3b3)
03041 Spliceosome [BR:
sjo03041
]
128358970 (sf3b3)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128358970 (sf3b3)
Transcription machinery [BR:
sjo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128358970 (sf3b3)
Spliceosome [BR:
sjo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128358970 (sf3b3)
Complex B
128358970 (sf3b3)
Complex C
U2 SnRNP specific factors
128358970 (sf3b3)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
128358970 (sf3b3)
TFTC complex
128358970 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
128358970
NCBI-ProteinID:
XP_053175351
LinkDB
All DBs
Position
5:27295904..27329179
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLVNPIQGTTLDQVQLEQNEAAFSVAVCRFTNAG
DDWYVLVGVARDMILNPRSTGGGFIYTYRLTSGGEKLEFVHKTPVEDVPLAIAPFQGRAM
VGVGKLLRIYDMGKKKLLRKCENKHVPNLVSGIYTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTCPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtacaacatcaccctgcagcgtgccactggcatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatcgtcgtctccagggggaaaatcttggagtta
cttcgacctgatgccaacacggggaaggtgcacactctgctcacagtggaggtttttggc
atcgtaagatctctgatggccttcagactcactggaggaaccaaagattacattgttgtt
ggaagtgacagcggccgcatcgtcatcctggaatatcatccatcaaaaaacatgtttgag
aagatccaccaggaaacatttgggaagagcggctgtcggcgcatcgtccccggacagttc
ctggctgtggaccctaaaggcagagctgtcatgatcggagcgatagagaaacagaagttg
gtttatattctgaacagagacgcagctgcaagactgaccatctcctctcctctggaagcc
cacaaagcgaacacactggtctaccacgtagtaggagtggatgtgggctttgaaaatccc
atgtttgcctgccttgaaatggactacgaggaagctgacaatgacccgacaggagaagca
gccgctaacacacagcagacgctcaccttttacgagctggacctcggcttgaatcatgtg
gtccgcaagtacagcgaggccttggaagagcacggaaatttcctcatcactgttcctggt
gggtcagacgggcccagcggagttctgatctgctccgaaaactacatcacttacaagaat
ttcggagaccagcctgacattcgctgtcccatcccacgacgcaggaatgacctggatgac
cccgagcgtggcatgatattcgtctgctcagccacccacaaaaccaagtccatgttcttc
ttcctggcccagactgagcagggagacatctttaaggttaccctggaaacagatgaagaa
atggtcacggaaattcggctgaagtactttgacacgatccccgtggcgacggccatgtgt
gtcctgaagaccggcttcctgtttgtgtcgtcagagtttggaaaccattacctgtatcag
atcgctcacctgggtgatgacgacgacgagcccgagttctcctctgcaatgccgttagaa
gagggggacaccttcttcttccaaccccgccccctcaagaacctggtgctggtggacgaa
caggagaacttatcgcccatcatgtcctgccagattgctgatttggccaatgaagataca
cctcagctgtacgtggcctgtgggcgagggcccaggtctactttgagagtccttagacac
ggattggaggtttcagagatggccgtctccgagctgcccggtaaccccaacgctgtgtgg
acagtccgcagacatgtggaagatgagttcgacgcctacatcatcgtgtctttcgtcaac
gctactctggtcctgtccatcggagagactgtagaagaagtgacagattctggtttcttg
ggaacaacgcccactctctcctgctcactgcttggtgaagacgccctggttcaggtatac
ccagacggaatccgccacatcagagccgacaagcgtgttaatgagtggaagactcccggc
aaaaagacaatcgtccgctgcgctgtgaatcagcggcaagtggttatcgccctcactgga
ggggagctggtttactttgagatggacccgtctggccagctcaatgagtacaccgagcgg
aaggagatgtcagccgatgtggtgtgtatgagcctggctaacgttcctcctggtgagcag
cgctcccggttcctggctgtgggactggttgacaacactgtccgcatcatctccctggac
ccttcggactgcctacagccactgagtatgcaagccctgcccgcccagccagagagtctg
tgtatagttgagatgggaggggtcgagaaacaggacgaacttggagaaaagggaaccatc
ggcttcctctacctcaacatagggcttcagaacggcgtgcttctgaggaccgtgcttgac
ccagtaactggtgatctgtcagataccagaacaagatatctggggtcacgacctgtcaaa
ctcttcagagtcaggatgcagggacaggaagctgtgctggcaatgtccagtcgctcctgg
ctcagctactcgtatcagtctcgcttccatctgacgcctctgtcgtacgagactctggag
tatgcctctggttttgcctcggagcagtgcccagaaggcatagtggccatctccaccaac
acactgagaatcttggctttggagaaattaggagctgtcttcaaccaggtggcctttcct
ctgcagtacaccccgaggaaatttgtgatccacccagagaccaacaacctcattttgatc
gagaccgaccacaatgcatacaccgaggccaccaaagcccagagaaagcaacagatggct
gaggagatggtggaggctgccggtgaggatgaaagagagctggctgccgagatggccgca
gcctttcttaatgagaatctcccagaagctattttcggtgcacctaaagctggagcgggc
cagtgggcctcactggtgcgactggtcaaccccattcagggtacaacgctggaccaggtg
cagctggagcaaaatgaagcagcgtttagcgttgcagtgtgtcgtttcaccaacgcagga
gatgattggtacgttttggtgggtgtggccagagacatgattctcaaccccagatcgacg
ggcggcggcttcatctacacctatcggctcaccagtggtggggagaagctggagtttgtg
cacaagaccccagtagaggatgtacctttggccattgctccattccagggacgtgccatg
gtgggagttgggaagctgctgagaatctacgacatgggcaagaagaaactgctacgaaag
tgtgagaacaagcatgttcccaacctggtgtcggggatctacacgatcggccagcgtgtg
atcgtgtccgacgttcaggagagtctgttctgggtccgttaccggcgcaatgagaaccaa
ctcatcatcttcgccgacgacacatgtccccgctgggtgacgacagcctgtctgctggac
tacgacaccatggcctctgctgacaagttcgggaacatcagcattgtgcgtcttcccccc
aacaccagcgatgacgtggatgaggaccccacagggaacaaagctttatgggacagaggt
cttcttaacggagcatcacagaaggctgaggtcatagtgaactaccatgtaggagagacg
gtgttatctcttcagaaaaccactctgatccctggaggttcagagtccctggtctacacc
acgctgtccggaggaatcggcatattggtcccattcacttcacatgaggaccacgacttc
ttccagcatttagagatgcacatgcgctccgagttccccccactgtgtggccgagaccac
ctcagctttagatcctactacttccccgttaagaatgtgatcgatggagatctgtgcgag
cagttcaacagcatggaccctcacaagcagaaaagcgtggccgaagagcttgatcgaacg
ccacccgaggtctccaagaaactggaggacattcgcactcgctacgccttctaa
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