Scomber japonicus (chub mackerel): 128359014
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Entry
128359014 CDS
T09718
Symbol
rag1
Name
(RefSeq) LOW QUALITY PROTEIN: V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
128359014 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sjo04121
]
128359014 (rag1)
Enzymes [BR:
sjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128359014 (rag1)
Ubiquitin system [BR:
sjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128359014 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4_2
zf-C3HC4
zf-RING_10
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
TRAF3_RING
U-box
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
128359014
NCBI-ProteinID:
XP_053175403
LinkDB
All DBs
Position
5:21940313..21944454
Genome browser
AA seq
1070 aa
AA seq
DB search
MVEQSPETNGLRSSMPAELQHPHSEYSQWKFKLFRVRSMEKAPLPSETQFEKGTLSGFTP
PVAPNIELDNGVDPGSVMKLCLGGKTKENVEGPARRVDMKLQEMDTHMNHLRCLCRLCGN
VLRKVKGPVHDVHADLDDASKVALRKMGCKFKIWPEIILKVFKVDVTEDTEAVHPLSFCH
RCWRAAIQGGGVCSFSKRRVPEWKPHSTPCHLCSPKKPSFQRRGRKRRTIPRAQSLAKRT
RWDHSNSIVIGERRALRPFGDHHQFSVFRTWKRTSTQREHWVKNITHCQKDHLSTKLISE
KLPVDFLFSFTCLVCDHLLFDPVQSPCGHLFCRSCIIKYNHILGPHCPACNLPCSPDNVT
PPSQSFLSALHSLPLLCPRDDCGQQVRLDLFKEHCVGHDLDEEYGNQQSSELDICLQANK
GGRPRQHLLLLTRRAQKHRLKDLKNQVKIFADKEEGGDLKSVCLTLFLLALRSGNEHKQA
DELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHSLRTSEK
ELLPGFHQFEWQPALKNVSASCNVGIINGLSGWTPSVDDSPLDTITRRFRYDVALVAALK
DLEEDIMEGLRHSGMEDSACTSGFSVMIKESCDGMGDVSEKHGGGPAVPEKAVRFSFTIM
SVSVLADGEEQAVTIFTEPKPNSELSCKPLCLMFVDESDHETVTALLGPLVAERNAMKES
RLILFIGGLARSFRFHFRGTGYDEKMVREMEGLEASGSSYVCTLCDSSRAEASENMVLHS
ITRCHEENLERYEIWRTNPFSETGDELRDRVKGVSAKPFMDIHPTMDALHCDIGNATEFY
KIFQDEIGEVYRKANPTREERRSWRAALDKQLRKRLKLKPVMRMNGNYARRLMTQDTIEA
VCELVPTEERREALRELMRLYLQMKPVWRATFPAKECPDQLCRYSFNSQSFADLLSSTFK
YRYNGKIPNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAFELE
DVLKHHWLYTSKYLQKFMEAHKDSAKALQATIDPEEMLDDEDMSLDVTDF
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggtggaacagagcccagagacaaatggcctcagatcctcaatgccggctgagctccag
catcctcactctgagtactctcaatggaagtttaagctgtttagggtgaggtccatggag
aaggcccctttgcccagtgagacacagtttgagaaaggaaccttgtcagggttcacgcct
cctgtagctccaaatatagaattggataatggtgtggatccaggtagtgttatgaaatta
tgcctagggggaaaaaccaaggaaaatgtggaggggccggccaggagggtagatatgaag
ctgcaggaaatggacacccacatgaaccacctcaggtgcctgtgccgcctctgtggaaat
gtcctaaggaaagtcaaaggcccagtacatgatgttcatgcagatctggatgatgcaagc
aaggtcgccctgcgtaaaatgggctgcaagtttaaaatctggcctgagatcatcctcaaa
gtcttcaaagtggacgtgacagaggatacagaagctgtccaccctctttccttctgccat
cgctgctggagggctgccatacaaggagggggtgtctgtagcttctccaaaagaagagtc
cctgagtggaaacctcactctaccccctgccatctttgctcccccaagaaaccatcattc
cagcggagaggtagaaagaggaggacgattccgagagctcagagcctggcaaaaaggacc
aggtgggaccacagcaacagcattgttattggggagaggagagctctgagaccatttgga
gaccatcatcaattttctgtgttcaggacctggaagagaaccagtacccagagagagcac
tgggtgaagaacatcacccactgccagaaagaccacctgagtacaaagctgatctcagag
aagctccctgtggacttccttttttctttcacctgcctggtgtgtgaccaccttctcttc
gacccagttcaatctccctgtgggcacctcttctgccgtagctgtattataaaatacaac
cacattctgggacctcactgcccggcttgcaacttgccctgcagccctgataatgtcacc
cccccctcccaaagttttttatcagccctgcactctctgcctttgctgtgccccagagat
gactgtggccagcaggtgaggctagatttattcaaagagcactgtgtgggccatgatctg
gatgaagagtatggaaaccagcagtcatcagaacttgacatctgcctgcaagctaataaa
ggggggagaccccgtcaacacttgctattgctaactcgccgtgcccagaagcaccggctg
aaggatctgaagaaccaggtgaagatatttgcagacaaagaggaaggtggcgacctgaag
tctgtgtgtctgacgctgtttctgcttgcactgagatctgggaatgaacacaagcaggca
gacgagctagaggccatgatgcaaggcagaggctttgggttgcatcctgctgtgtgtttg
gccattcgggtcaacactttcctgagctgcagccagtatcacaagatgtaccggactgtc
aaagccaccagtggccgccagatcttccagcccctgcatagcctgcgaacgtcagagaag
gagcttctccctggctttcaccagtttgaatggcagccagctctcaagaatgtgtctgca
tcttgcaatgttggcattattaatgggctctctggatggactccctcagtggatgactcc
ccacttgacaccatcactcggcggtttcgctatgatgtggcactggtggcagcattaaag
gacctggaggaggacatcatggaggggctgagacatagtgggatggaagacagtgcttgc
acctcaggcttcagtgttatgatcaaggaatcttgtgatggcatgggcgatgtcagtgaa
aagcatggtggaggaccagctgttcctgagaaggctgtacgtttctcttttactattatg
tctgtctctgtcctggcagatggggaggagcaggcggttactatcttcacagaaccaaag
ccaaactcagaactgtcctgtaagcccctttgcctgatgtttgtggatgagtcagaccat
gagactgtcacagctctcctggggcctttagttgcagagcgtaatgcaatgaaagagagc
aggctcatccttttcattggtggcctggctcgctccttccgcttccactttagaggtacg
ggatatgatgagaagatggtgcgagagatggagggcctagaggcctcagggtccagctat
gtctgcactctatgtgattccagtcgggcagaagcatctgaaaacatggtgctacactcc
atcacccgctgccatgaagagaaccttgaacgttatgaaatatggagaaccaaccccttt
tctgagactggagatgagctgcgggacagagtgaaaggggtctctgccaaacccttcatg
gacatccaccccacgatggatgcattacattgtgacattggcaatgctactgagttctac
aaaatcttccaagatgaaatcggggaggtgtaccgaaaggccaatcccacccgtgaggaa
cggcgcagctggagagcggccctagataaacagctgaggaagaggttgaagcttaaaccg
gtaatgaggatgaatgggaactatgcccgcaggctaatgacccaggatactatagaggcg
gtgtgtgagctggtgcccacagaggagagaagggaggccctgagggagcttatgaggcta
tatctccagatgaagcctgtgtggcgtgccaccttcccagccaaggagtgccctgaccag
ctgtgccgctatagctttaactcccagagctttgctgacctcctctcctctactttcaaa
tataggtacaatggaaagatacccaattacctgcacaagaccctggcccatgtccctgaa
atcatagagagagatggatccatcggagcctgggccagtgaggggaacgagtctgcaaac
aaactgttcaggcgtttccggaagatgaatgctcgtcagtcaaaggcttttgaactagag
gatgtgttgaagcatcattggctctacacctccaagtacttgcagaagtttatggaggct
cacaaagactctgccaaagctctacaagctaccattgaccccgaagagatgcttgacgat
gaagatatgtctctggacgttactgatttctga
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