KEGG   Scomber japonicus (chub mackerel): 128359343
Entry
128359343         CDS       T09718                                 
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03420  Nucleotide excision repair
sjo04115  p53 signaling pathway
sjo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    128359343 (ddb2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    128359343 (ddb2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    128359343 (ddb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sjo04121]
    128359343 (ddb2)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128359343 (ddb2)
Ubiquitin system [BR:sjo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     128359343 (ddb2)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      128359343 (ddb2)
SSDB
Motif
Pfam: WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 WD40 Beta-prop_EML Beta-prop_EML_2 Beta-prop_RIG_2nd Beta-prop_IFT140_1st EIF3I Beta-prop_TEP1_C Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_WDR19_1st WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 NBCH_WD40 PEP5_VPS11_N DUF1707
Other DBs
NCBI-GeneID: 128359343
NCBI-ProteinID: XP_053175811
LinkDB
Position
5:10902359..10908153
AA seq 522 aa
MVLQLYANPRSAAVNLLQTVKFTGGAMKTKRRTADASESKKKAKNSGPTLSKKLRDKKNG
ETSKPGPPLKSAGPPLKSAGVQRRGGHGSILHYIYKSTLGQSLHSQMRQCLQEPFVRSLS
SYHFHGANSPFDRRITCLEWHPTHPTTLAVASKGGDMFLWDYEMPAKQTFIQGNGAGDFI
GGMKFCPTDVSKVYVATGEGRLTMKSFEGRAHTVLSTTQDCGHDHHNVCYWFCCVDVSVS
RQMLVTGDNKGQLSLLGLDGQKIFSEKLHKEKVSHAEFNSRCDWLLATASVDHTVKLWDL
RNIKDKKSFLHDMPHDKAVNSAYFNPVDCSKLLTTDQYDQIRVYSSSDWSKPQQIIQHPH
RQFQHLTPIKATWHPVYDLIVVGRYPDNRVCTGDERTIDIFDSNTAELVCQLQDPSASGI
KSINKFNPMGDVIGCGMGVTALVWDRNESLIGDGDKLQEETSASVDSLRSQRRGQQRPAR
NRRGPAVDIKLMKKLASLEESETKTKTKTGCTRQKQAQMRKK
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggtgctgcagctttatgctaaccctagatctgctgctgtgaatctgctacaaacagtg
aagttcacaggaggagcgatgaaaaccaaacggaggacagcagatgcgtctgaatcaaag
aaaaaagcgaagaactctggtccaactctttccaaaaaactacgagacaagaaaaatgga
gaaacatccaagccaggacctcctctgaagtctgcagggcctcctctgaagtctgcagga
gtccagaggagaggagggcatggcagcatcctgcactacatttacaaaagcactctggga
caaagtcttcactctcagatgagacagtgtctccaggagcctttcgttcgctccttgtca
tcctatcatttccacggagccaacagccccttcgaccgcagaatcacctgtctggagtgg
catcccactcaccccaccacgctggctgtggcatccaaaggtggagacatgtttctgtgg
gactacgagatgccagcaaagcagacttttattcaagggaacggagccggagactttatc
ggggggatgaagttttgccctacggacgtctctaaagtctatgtcgcaactggtgagggc
aggttgaccatgaagagctttgagggccgcgctcacaccgttctgtccacaactcaagac
tgtggccacgatcaccacaatgtttgttactggttctgctgtgtagacgtgtctgtgagc
cgacagatgcttgttacaggagacaataagggacagctctcactcctgggtttggatggc
caaaagattttcagtgaaaagttgcacaaagagaaagtgagccacgcagagttcaactcc
cgttgtgattggttgctggccacggcctcagtcgaccacacggtgaagctttgggacttg
aggaacattaaagacaagaagagcttcctacatgacatgcctcatgacaaagctgtcaac
tcagcttatttcaatccagtggattgctccaagttgctcacaacagatcagtacgaccag
atccgggtttactcgtcctcagattggtcgaagcctcaacagatcatccaacatccacac
agacagtttcagcatctcacacccatcaaggctacatggcatcctgtgtatgaccttatt
gtggtgggccgttacccagacaaccgggtttgcaccggtgatgagaggaccattgacatc
tttgactccaacacagcagagcttgtgtgtcagctgcaagatcccagcgcttcaggaatc
aaatctatcaacaaattcaatccaatgggtgatgtgattggatgtggaatgggtgtaacg
gcgcttgtttgggataggaacgagtcattgattggtgatggagacaaactgcaggaggaa
acctctgcgtcagtggacagtttgagaagccagcggaggggtcagcagcggcccgccagg
aacaggagaggccctgctgtggatataaagctcatgaaaaaactggcttctctggaagaa
tcagagaccaaaactaagaccaagactgggtgtactagacaaaaacaagcccagatgagg
aaaaagtga

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