Scomber japonicus (chub mackerel): 128359408
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Entry
128359408 CDS
T09718
Name
(RefSeq) transient receptor potential cation channel subfamily M member 1-like
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sjo04040
]
128359408
Ion channels [BR:
sjo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128359408
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
LSDAT_prok
Ion_trans
YVC1_C
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
128359408
NCBI-ProteinID:
XP_053175877
LinkDB
All DBs
Position
5:complement(16664409..16684991)
Genome browser
AA seq
1687 aa
AA seq
DB search
MDGKGPSGTFKRSSLKRTASGSQRAQRAWIERTFQKRECIHIFPSKDPTRCACGQLTTQH
PAIPPGANSLEEANQLVHIDTPKDKWSVIKHTRTYPTDAYGVIEFQGGGFINKAMYIRVS
YETKPDNLLHLMVKDWQLELPTLLISVHGGLQNFDLQPKLKQVFGKGLIKAAVTTGAWIF
TGGVNTGVIRHVGDALKEHSSKSRGKVCAIGIAPWGILENKEDLLGKDVTRPYQTMANPL
SKLAVLNNSHSHFILTDNGTCGKYGSEVKLRRLLEKHISLQKINTRLGQGVPLVCLLVEG
GPNVISIALESLRDEPPIPVVVCDGSGRASDIISFAHKFSEDGGLVNDDVRDQLLVTIQK
TFNYTKSQSQQILLMVMECMKKRELITVFRMGSEGQQDIEMAILTALLKGTNAAAADQLS
LALAWNRVDIARNHIFVYGHNLPPAGAMAYATTAVAPAQEKQKSPTTAPRNKTRGKKGKG
KGKGKAKPEPPEETDPRKLEMIRWVNSLEQAMMDALVLDRVDFVKLLLENGVNIHHFLTI
PRLEELYNTKLGPANTLHAVVRDVKKGNLPPDYQITLIDIGLVLECLMGGAYRSNYTRKA
FRNLYNNLYGLKRPKALKLLGMEDDEPRTKGKKKAKKKREEEVEIDVDDPEVCRFKFPFH
ELMLWSVLMKRQKMSLFLWQRGEEAMAKALVACKLFKAMAHECSESELVDDISQDLENNS
KEFGQLAYELLDQSYKHDEQVAMKLLTYELVNWSNSTCLKLAVAAKQRDFIAHTCSQMLL
TDMWMGSLRIGKNPGLKVILGIIFPLFIFLLDFRLGDDASYHESGDKEAGKEKDDDAKLN
KDPNADTTSRKGDEEEGSTKVRRIPIGKRFFEFYDAPFTKFWFNTICYLGYLMLYNYIIL
VKMERWPSLQEWTVIAYILTLGAEKVRQILMSEPGKLKQKISVWMEEYWNITDLAAICTF
LLGLMLRLQHEPYMGYGRVIYCIDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMMYFV
VIMLVVLMSFGVARQAILHPDEEPTWRLARNIFYMPYWMIYGEVFADSIDLYAMEINPPC
GEHLYDEDGKKLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFCEIKSISNQVW
KFQRYQLIMTFHDRPILPPPLIIFSHIYILLSRLFRRCARKRQEGELDEKDRGLKLRLNP
EELKSLYEFEEQCVEEYFREKEDEQQSSSDERIKVTSERVENMFMRLEEVNERENTMKAS
LQTVDLRLAQLEEIHGRMAVALEKLAGVDKLELTRTLSRNSSMCDPSSLLRQGSINSADG
YSLYRFHMDMEEFAAKQKETDDPGLERKKSFLNANPKEGGQTLEVGGLDRSRPSSCVDIL
ISPCEQKPISNASSQETINKTQGSTMMLDRLTDKNRLRPSSPPKRTKSLKYYPVDDQDTS
TLTKRRAMSTIIVGPPDDPVEAAEPTKTTELPVGTSSSPKRTKSLRYFPSETQSQTSPTT
KKRAMSSIIYNPIEAGDDVMQTAQYRALMEQATKTPNQWPEDLEFKVHPSVFGHMPKVSM
VKALAQQFQTTPTPGELKQEESLIDQIPLESKGAPPPIEPMEDQTKTKPKRNLSDGTDYL
TVAQKYMPSQRSQSWNATERKAMLASKAGASSSERDLAEPCRVPAVGGKDVGKKMEAEKR
DGDAQEE
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaagggccctagtggcacctttaaacgatcctccctcaaacgcaccgcttct
ggctcgcagagggcgcagagagcttggattgagaggacctttcaaaaacgagaatgtatt
cacatatttcccagcaaggacccgaccagatgtgcctgtggtcagctgacaacacagcac
ccagccatccctcctggtgccaactctctagaagaggcaaaccagctggtacacattgac
accccgaaggataaatggagtgtgatcaagcacactaggacctacccaacagatgcttat
ggtgtaatcgagttccagggtggaggattcatcaacaaggccatgtacatccgggtttcc
tatgagacaaagccagacaacctgcttcatttgatggtgaaggactggcagttggagttg
cccacgttgctcatctctgtgcatggaggtctccagaacttcgacctccagcccaagctc
aagcaagtttttggcaaaggcctaatcaaagctgctgtcaccactggagcttggatcttc
acgggtggagtaaacacaggggtcatccgtcacgttggagatgctttaaaggagcattcc
tctaagtcacgaggcaaagtgtgtgcaataggaattgcgccatggggcatcctggaaaac
aaagaggaccttcttggaaaagatgtaaccagaccctatcagacgatggccaacccactg
agcaagttggctgtgctcaacaacagccactcccacttcatcctgaccgacaatggcacc
tgcgggaagtacgggtccgaggtcaaacttcgccgactgctggagaagcacatctctctg
cagaagatcaacacccgtctgggccaaggggtccctttggtgtgtctgctagtggagggg
ggtcccaatgttatctccattgccttggaaagtctgagagatgagcctcccattcctgtg
gtggtgtgtgacggcagcggtcgagcttctgatataatttccttcgcgcacaagttctca
gaagatggaggcctggttaatgatgatgtcagagaccaacttttggtgaccatacagaag
actttcaattacaccaaaagccagtcacagcagatcctgctcatggttatggagtgcatg
aagaaaagggaactgatcacagttttccgaatgggctctgaaggacaacaagatattgaa
atggccattctcactgccttgttaaaaggcacgaacgccgcagcagctgaccagctcagt
ttggctttggcctggaacagagtggatattgctcgcaatcacatctttgtgtatggacac
aatttaccacctgctggtgccatggcctacgctacaactgctgtagccccagcccaagag
aagcagaagagtcccaccactgcccctcgcaacaaaaccagaggaaagaaggggaagggg
aaggggaaaggaaaggcaaaacctgaacctccagaggaaaccgatccaaggaagttggag
atgattcgctgggtgaactctctggagcaggctatgatggatgctctggtgctggacaga
gtagactttgttaagctgctccttgagaatggggtcaatattcaccacttcctcaccatt
cccagactggaggagttatacaacacaaaactaggccctgcgaatacactgcatgctgta
gttagagatgtcaaaaagggaaaccttcccccagattatcagatcactttgattgatatt
ggtttggtgctggagtgcctcatgggtggagcttacagaagcaattacaccagaaaggct
ttccgcaacctctacaataatttgtatggactaaaaaggccaaaagctctgaagcttcta
ggaatggaggatgatgaacctagaacaaaaggcaagaaaaaggcaaaaaagaaaagggag
gaagaggtagaaattgatgtggatgaccctgaggtgtgtcgattcaaatttccctttcac
gagctgatgctgtggtcagtgctgatgaagcgccagaagatgtcactgttcctctggcaa
cgaggagaagaagctatggccaaggctctggtagcctgtaaactgttcaaggctatggcc
catgagtgctctgagagtgagctggtggatgacatctcccaagacctggagaacaactca
aaagaatttggccagctggcttacgagttgttggaccagtcctacaagcatgacgaacag
gtggcaatgaaactcttaacgtacgagctggttaactggagtaactccacctgtctgaag
ctggctgtggctgctaagcaacgagacttcattgcccacacgtgcagccagatgttactc
actgacatgtggatgggctccttaaggattggcaaaaaccccggcctcaaggttattctg
ggaattatcttccctcttttcattttcttgttggatttccgtcttggagatgatgcgtcg
taccatgaatctggagacaaagaagctggaaaggaaaaggatgatgacgcaaaattgaac
aaggaccctaatgctgatacaacttcacgaaagggggatgaagaggagggcagcaccaag
gtccgcagaatccccatcggcaaaaggttctttgagttttatgatgcgcctttcaccaaa
ttctggttcaacactatttgttatctgggctatctgatgttatacaattacataatcctt
gtgaaaatggagcgatggccatctttacaagagtggactgtcattgcatacatccttaca
cttggtgctgagaaagtcagacagattctgatgtctgagccagggaagctgaagcagaag
ataagtgtgtggatggaggagtactggaacatcacagacctggctgccatttgcaccttc
cttcttgggctcatgctacggctgcagcatgagccttatatgggctacggcagagtcatc
tactgcatagacatcatcttctggtacattcgcgtattggacatctttggagtcaacaaa
tacctggggccttatgtgatgatgataggaaagatgatgattgacatgatgtactttgta
gtgatcatgctggtggttcttatgagctttggagtggcacgacaagccatccttcaccct
gatgaggagccaacctggcgcctggccagaaacattttctacatgccctactggatgatc
tatggagaggtttttgcagactcgatagacctctatgcaatggaaatcaaccctccatgt
ggtgaacatttgtatgatgaggatgggaaaaaattgcctccatgtatccccggtgcttgg
ctcacacctgctattatggcctgctacctgctggtggcaaacattcttctggtcaacttg
ctcattgctgtcttcaacaacaccttctgtgaaatcaagtccatttccaaccaggtgtgg
aagttccagagatatcagctcatcatgacctttcatgaccgccctatcctacctccacct
ctcatcatcttcagccacatctacatcctcttaagcaggctgtttcggcgatgtgccagg
aagagacaagagggagaactagatgagaaagaccgtggcctcaagctgaggctgaatcca
gaggagctaaaaagtctgtacgagtttgaagaacagtgtgtggaggaatatttccgagag
aaggaggacgagcagcagtcttccagtgatgagcgcatcaaggttacctctgaaagagtt
gagaatatgttcatgcgtttggaggaggtaaatgagagggagaacactatgaaggcctcc
ctgcagacggtggatttgcgcctggctcaactggaggagatccatggtcgaatggcagtc
gccctagaaaaactcgcaggagtggacaaattggagctgaccagaacattgtcccgaaac
tcctcaatgtgtgatccttcctctctacttcgccagggcagtattaacagtgctgatggt
tacagcctttaccgcttccacatggacatggaagagtttgcagcgaagcagaaggaaact
gatgatcccggcctagaaagaaagaagagttttctcaatgcaaacccaaaggagggtggt
cagaccttagaggttggtggtctggatagatcgcgacccagttcatgtgtggacatcctc
atatctccatgtgaacagaagcccatttctaatgcatcaagtcaagaaaccataaacaag
acacaaggcagcacaatgatgctagacagactcacagacaagaacagactaagaccttcc
tctcctccaaaaagaaccaaatcactgaaatactatccagttgacgaccaagacacctct
accttgacaaagaggagagccatgagcactatcattgtgggccctcctgatgatccagtg
gaagctgctgaacccacaaagaccaccgaattgccagtggggacttcctcttctccaaag
agaactaaatctctgagatatttcccatctgaaacccaaagccaaacatccccgacaaca
aagaaaagggctatgagcagcatcatctacaacccaattgaggcaggtgatgatgtgatg
caaaccgcacaatacagggcattgatggagcaagcaactaaaaccccgaatcaatggcca
gaagacttggagtttaaggtgcatcccagcgtctttggtcacatgcctaaagtgtcaatg
gtcaaagctcttgcacagcagtttcaaactacccctacacctggagagcttaagcaagag
gaaagtctgatagatcaaattcctttagaaagtaagggagctcccccaccaatagaaccc
atggaagaccagacaaagacgaagccaaagagaaacctatcggacggtactgattatctg
actgttgctcaaaagtatatgccgtctcaaaggtcacagagctggaatgcaacagagagg
aaagcaatgttggctagcaaggcgggggcctctagcagcgagagagaccttgctgaacca
tgtagggtgccagctgttggagggaaggatgtaggaaagaaaatggaagcagagaagaga
gatggtgacgcacaggaagagtaa
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integrated database retrieval system
