Scomber japonicus (chub mackerel): 128359515
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Entry
128359515 CDS
T09718
Symbol
lrp5
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04150
mTOR signaling pathway
sjo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128359515 (lrp5)
04150 mTOR signaling pathway
128359515 (lrp5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128359515 (lrp5)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
128359515 (lrp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
SGL
EGF_LRP2
cEGF
Insulin_TMD
EGF
Motif
Other DBs
NCBI-GeneID:
128359515
NCBI-ProteinID:
XP_053175983
LinkDB
All DBs
Position
5:33313961..33389645
Genome browser
AA seq
1590 aa
AA seq
DB search
MYLKRRGLEMGGLLVLLLLWSCLLSAVDGSPLLLFANRRDVRLVDADGVRGESPIVVSDL
EDAAAVDFLYAEGLIFWTDVSEEAIKQTRWNQSSNSLKEALGTGQTVVVSGLDSPDGLAC
DWLGRKLYWTDSETNRIEVANLDGTSRKVLFWMDLDQPRAIALNPAQRYMYWTDWGEEPR
IERAGMDGSNRKVIVNVDIYWPNGLTIDLVEQKLYWADAKLSFIHRANLDGSARETVVEG
TLTHPFALTLSEETLYWTDWQTRSIHACNKNSGDKTREILSGIYSPMDIQVLESYRQPYI
QTPCSEDNGGCSHLCLLSPVKPFYSCACPTGVQLNPDKKTCKPGAEQVLLLARRTDLRRI
SLDLPDFTDIVLQVDDIRHAIAIDYDPVEGYVYWTDDEVRAIRRSHIDGSNAMVLVTTEI
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILISENLDEPRAIVLDPVNGYMYW
TDWGEHPKIERANLDGTERFVLLNSSLGWPNGLAIDHAAGKLYWGDAKTDKIEVINVDGS
NRQTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKSTAVREIIIDQLPDLMGLKATK
VTETNGTNGCALENGGCSHLCFWRRLAVSCACPMGMELLSDLQTCVVPEAFLLFTNRDNI
RSISLGTNSNDVPIPLTGVKEASALDFDVSERMIYWTDIQTKTISRAYMNGSSVEHVIEF
GLDYPEGMAVDWMGRNIYWADTGTNRIEVARLDGQYRQVLVSKDLDNPRSLALDPANGYM
YWTEWGGRPRIARAYMDGSTIVTLVDKVGRVNGLTIDYVDHRLYWTDLDTNMIESTNMQG
LQREIILDDLPHPFGLTQYRDFIYWTDFNLHSIERADKRSGLNRTVVLQGQLELMLDILV
FHSSRQDGTNECSHNNGNCAHLCLATPAGAQCRCASHYTLNPDGRNCSSSRASHMTSVCF
FLQSTMIAGGSSLPTENQLHDLSLDPYSRHIYWTCETTNTINVQRMDGQTVGVVLKDDTD
KPRASWSTQRKGYMYFTTVQERSAKIEGASLDGTERESLFTTSLIRPVALALDNKLGKLF
WVDADLKRIESSDLTGANRIVLQDSNILQPMGLTVLGDHLYWIDRQQQMIERVDKLTGDG
RTRIXGRISYLTSIHAVEEMDPQEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLL
QDLLHCGEPPTCSTEQFTCSTGEIDCIPMAWRCDGFPECDDSSDEENCPVCLAYQFQCDK
GGCIDAQRRCNGEPDCADHSDEQDCENICPPNQFRCGDNQCITKKQQCDNYSDCPDGSDE
LACEYVSPPSSGIPNTGPNTIGPVIAIILLVFVIGGAYFVCQRVVCRRYKGPSGTFPQYI
SGTPHVPLDFIARAAHTPAPSTGISCGKSMMSSVSLMGSSSSGAPLYDRNHVTGASSSSS
SSTKGAFYPQILNPPPSPATDRSLYNTEIFYSSNSPSTTRSYRPYHPVRGAAPPTTPCST
DVCDSDYTPHHPVAGLASSAGRWKAASHGGHGKHNKYYMDLNSDSDPYPPPPTPRSQYLS
AEESCPPSPSTERSYFHLCPPPPSPCTDSS
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaaagcgcagaggacttgaaatgggcggtctgctggtgctgttgctgctgtgg
agttgcctgctgtcggcggttgacggctcaccgctcctcctctttgccaaccggcgagat
gtcagactggtggatgctgacggagtacggggcgagtcgcccatcgtcgttagcgacctg
gaggacgcggcagcagtggacttcctgtacgccgagggcctgatattttggacagatgtc
agcgaggaggccatcaaacagacgcgctggaatcaatcatccaactcccttaaagaggca
ttgggaacggggcagactgtggtcgtatcggggctagacagtcccgacggtctggcctgc
gactggttgggaaggaaactctattggaccgactctgagaccaatcggattgaagtggcc
aacctggacggcacctccaggaaagttctgttttggatggacttggaccagcccagagct
atcgcactgaaccccgctcaacgctacatgtactggacggactggggggaagaacctagg
atagaacgggctggcatggacggcagcaacaggaaagtgatagtgaatgtggacatatac
tggcccaatggtctgaccattgatctggtggagcagaagttgtactgggcagatgccaag
ctaagctttattcacagagctaacctggatggatctgcacgtgaaacagtggtggagggc
acgctgacccatccctttgcactaacactatctgaggagaccttatactggactgactgg
cagacccgctccatccacgcctgtaacaaaaacagcggagacaaaaccagagagatcctc
agtgggatttactctcctatggacattcaggtcctggagtcatatcgacaaccttacatc
cagactccatgtagtgaggataacggaggctgtagtcatctctgcctgctctctccagtc
aagcctttctacagctgtgcctgccccactggagtccagctgaacccagacaagaagaca
tgcaaaccaggagcagagcaggtgttgctactggctcgacggactgacctgaggagaata
tctctggacctgccagacttcaccgacatagtcttgcaggtggatgacatccgccacgcc
atagctatagactacgatccggttgagggttacgtctactggacagatgacgaagtgcgg
gccattcggcgatcccacatcgatggcagcaacgccatggtgctggttaccacggagatc
aaccacccagatggcattgctgtggactgggtggccagaaacctgtactggactgacacc
ggcactgacaggatagaggtcaccaggctgaatggaacctctcggaaaattttgatttct
gagaacctggacgaacccagagccatcgtcctggaccctgttaatggctacatgtactgg
acagactggggggagcatcccaaaatcgagcgagccaacttggacggaacggagaggttc
gtcctgctcaacagctctctgggctggcccaacggactagctatcgaccatgctgcggga
aaactgtactggggagacgccaaaaccgacaagatagaggtgatcaacgtggatggcagt
aacagacagactctgctggaggacaagctgcctcacatctttggtttcactctgctggga
gattacatctactggacggactggcagagacgcagcatcgagagagtccacaagtccacg
gctgtacgagagatcatcatcgatcagctgccagatttaatggggctgaaagccaccaaa
gtgacagagactaatggtaccaacggctgtgctctggagaacggaggatgcagtcatctg
tgtttctggcgtcggctggctgtcagctgtgcctgtccaatggggatggagctgctgtct
gacctgcagacctgcgtggtgcctgaagccttcctgctcttcaccaacagagacaacatc
aggagcatctctctgggtaccaacagtaacgacgttcccatccctctgactggagtcaaa
gaggcctctgctctggactttgacgtgtcagaaaggatgatctactggactgacatacag
accaagacgatcagcagagcctatatgaacggcagctctgtagagcacgtgatcgagttt
ggactggattacccagaaggcatggcggtggactggatgggtcgtaacatatactgggcc
gacacgggaaccaaccgcatcgaggtggcccggctggatggccagtacagacaagtcctg
gtctctaaggacctggataacccacgatcactagcactggacccagccaacggctacatg
tactggacagagtgggggggtcgacctcgtatagccagagcttatatggacggcagcacc
atcgtcaccctggtggataaagtgggccgagtcaacggactgaccattgactacgtggac
catcgactctactggaccgacctggacactaacatgatagagagcaccaacatgcaaggt
cttcagagggagatcatactagatgacctgcctcatcccttcggtctgactcagtaccgt
gacttcatctactggacagattttaacctgcacagcatcgaacgggccgacaaacgcagc
ggactcaaccgcaccgtggtgctgcagggccagctggagctgatgctggacatcctggtg
ttccactcttcccgtcaggacggcaccaatgaatgctctcacaacaacggcaactgcgcc
catctctgcctggctacacctgctggagcacagtgccgctgcgcctcccactacaccctg
aacccagacggacgaaactgcagctccagtagagcttcacacatgacctccgtgtgtttt
ttcctccagtccaccatgatagcaggcggcagcagtctaccgacggagaatcagcttcat
gacctgagcctggacccctacagccgccacatctactggacctgtgagaccaccaacacc
atcaacgtccagaggatggacggacagacagtgggagtggtcctgaaggacgacacagac
aagccacgggcatcgtggtcaacgcagagaaaggggtacatgtatttcaccacagtgcag
gagcgctcagctaagatagaaggagccagtctggacgggacagagagagagtctctgttc
accactagtctcatcagacctgtagctctggctctggacaataaactgggaaaactgttc
tgggtggacgcagacctcaaacgcatcgaaagcagcgacctgacaggagccaatcgcatc
gtcctccaggactccaacatcctgcagcccatggggctgacagttctgggggatcacctg
tactggatcgaccggcagcagcagatgatagagagggtggacaaactgaccggagacgga
cggacacgcatancagggcgcatatcatacctgacctccatccatgctgtggaggagatg
gaccctcaggagtttgcatctcacccctgttcacgtgacaacggagggtgttctcacatc
tgcatcgctaagggcgacggcacacctcgatgctcctgtcccatgcacctggtgctactg
caggacctgctgcactgtggagagcctcccacctgctccacagagcagttcacctgctcc
acaggtgagatcgactgcattcccatggcgtggcgttgtgacggctttcccgaatgtgac
gacagcagcgatgaggagaactgccccgtctgcttggcctaccagttccagtgtgataaa
ggaggctgcatcgatgctcagaggcgctgcaacggagagcctgactgcgccgatcactct
gatgagcaggactgtgaaaacatctgccctccaaaccagttccgctgtggtgacaaccag
tgtatcaccaagaaacagcagtgtgacaactactctgactgtcctgatggatcagacgag
ctggcctgtgagtacgtgtcacctccctccagtggcatccccaacacgggacccaacacc
atcgggcccgtcatcgccatcatcctgctggtgttcgtgatcgggggcgcttacttcgtg
tgccagcgtgtggtgtgtcgacgctacaaaggccccagcgggactttccctcagtacatc
agcggtacgcctcacgtgcctctcgatttcatcgcccgagcagctcacaccccggcacct
tccacaggtatctcctgtgggaagtccatgatgagttcagtcagtctgatgggcagcagc
agcagtggagctcctctctatgacaggaaccatgtgaccggagcttcatccagcagctcc
tcatcaaccaagggagccttctaccctcagatcctgaaccctcctccgtccccagctact
gatcgctccctctacaacacagagatcttctactcctctaacagtccatccaccaccaga
tcatacaggccctaccatccagtccgtggtgccgccccccccaccacgccctgcagcacc
gacgtgtgcgacagcgactacaccccccaccacccggtggccgggctggcgtcgtcagcc
ggccgctggaaggccgcgagccacggcggccacggcaaacacaacaagtactacatggac
ctgaactcagactccgacccttaccccccgccccccactccccgatcccagtacctgtca
gccgaggagagctgccccccgtccccttccaccgagcgctcctacttccacctgtgcccc
cctcccccgtcgccctgcaccgactcctcatga
DBGET
integrated database retrieval system
