Scomber japonicus (chub mackerel): 128359531
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Entry
128359531 CDS
T09718
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128359531 (ctcf)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128359531 (ctcf)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128359531 (ctcf)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128359531 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-WIZ
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
128359531
NCBI-ProteinID:
XP_053175997
LinkDB
All DBs
Position
5:32982843..32995293
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AA seq
833 aa
AA seq
DB search
MEGGPAEGVGVVEVPAKDFPSIQAVHSQDAMVADLLQQAAEAGGVVDGQTGVVLEQGHGE
GMVAASQAQQQLMEAGVGVDSGAGVEMMVMDSLDPTLLQMKTEVIDAAVGGSSAGVGAAH
QATVTTVDQTQIITLQVVNMEEQAALGLGELQLVQVPVSATTVEALQQGTYVDTTAMPKD
GDPVICHTLPLPEGFQVVKVGANGEVETVEQEEGGEVHPEEEEEEEVGDQLMEEGEEEPI
QPPNEDPTWPKDPDYQPPCGAIKRSKKGKKSRLRYAEGDKDMDVSVYDFEEEQQEGLLSE
VNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLC
GRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYA
SVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQS
GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFIETGKKCRYCDAVFHER
YALIQHQKSHKNEKRFKCDMCDYCCRQERHMVMHRRTHTGEKPYACSQCEKTFRQKQLLD
MHFKRYHDPNFVPTAFVCPKCSKTFTRRNTMARHAENCSGEVEDAENGTPPPKKGKRGRK
KKMRSRRDEEDSEEDNIEPDEEDEGDGDEEALLQEEDDPESMELDQAPAAIPVPAPDEPP
VKRKRGRPPKNAPKPPTPSKSVRVAAKTAASAAAIIQVEDESTGAVENIIVKKEEGDTSA
ATPLQQGVALTVEGVGLDGEGVETVELAVNEETAAAAANGDLTPEMILSMMDR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggagggagggccagcagagggtgtaggggtggtggaggtccccgccaaagacttcccc
tccatccaggccgtccacagccaggacgctatggtggcagacctcctccagcaggctgca
gaggccggcggcgtggtggatggacagaccggagtggtcctggaacaaggtcacggggaa
gggatggtagcagccagccaggctcagcagcagctgatggaggctggagtgggagtggac
agtggagctggggttgaaatgatggttatggactcgctggatcccacactgctgcagatg
aagactgaggtgatagatgctgcagtgggtgggtcatcagcaggagtgggtgctgctcac
caagcaactgtaacaacggtggaccagactcaaatcatcacactacaggtggtaaacatg
gaggagcaggcagcgctgggcctgggggagctccagctggtccaggtgccagtctctgcc
accacagtagaggctctgcagcaaggcacctatgtagacaccactgctatgccaaaagat
ggagacccagtcatctgccacaccctgccgctgcctgagggctttcaggtagtgaaggtg
ggtgctaatggagaggtggagacagtagagcaggaggagggaggagaagtccacccagag
gaggaagaagaggaagaggtgggggatcagctgatggaagaaggagaggaggagcccatt
cagcccccgaatgaagaccccacctggcccaaagaccctgactatcagcctccatgtgga
gccatcaagaggtccaaaaagggtaaaaagagccgtctgcgttacgctgaaggagataaa
gacatggacgtcagcgtgtatgactttgaggaggagcagcaggagggtcttctgtctgag
gtcaatgctgagaaggtggtgggcaacatgaaaccacccaaacccaccaagatcaagaag
aaaggagtgaagaagacgttccagtgcgagctgtgcagctacacgtgcccccgccgctcc
aatctggacagacacatgaagagccacaccgacgaaagacctcacaagtgtcacctgtgt
ggccgagccttcaggacggtcaccctgctcagaaaccatctcaacacacacactggaact
cggccacacaagtgcacagactgtgacatggccttcgtgaccagcggagagctcgttcgt
caccgtcgctacaaacacacacatgagaaacccttcaaatgctccatgtgtgactacgcc
agtgtggaggtgagcaaactaaagcgtcacattcgttcccacactggcgagcgtccattc
cagtgcagcctttgcagctacgccagcagagacacctacaagctgaagagacacatgagg
acacattcaggagagaaaccatacgagtgctacatctgccacgcccgcttcacccagagc
ggaaccatgaagatgcacatcctgcagaaacacactgagaacgtggccaagttccactgt
ccacactgtgacaccgtcatcgcacgcaagagtgacttaggcgtccacctccgtaagcag
cactcgtttatcgagacaggaaagaagtgccgttactgcgacgccgtgttccacgagcgc
tacgccctgatccagcatcagaagtcccacaagaacgagaagaggttcaaatgtgacatg
tgtgactattgctgccgccaggagcgtcacatggtgatgcatcgtagaacccacactgga
gagaagccgtacgcctgcagtcagtgtgagaagacgttcagacagaagcagctgctggac
atgcacttcaaacgctaccacgaccccaactttgtccccaccgccttcgtctgccccaag
tgtagcaagaccttcacacgcaggaacaccatggctcgccacgctgagaactgctctggt
gaagtggaggacgccgagaacggaaccccacccccgaagaaaggaaagagaggaagaaag
aagaagatgaggagcaggagagatgaagaggacagtgaggaagataacatcgaaccagac
gaggaagacgagggcgacggcgacgaggaagcactgttacaggaagaggacgatccagaa
agcatggaactggaccaggccccggccgccatcccagtaccggcccccgatgagccaccg
gtcaagaggaaacgaggccgacccccaaagaacgcccccaaaccaccaacacccagcaag
tcagtcagagtggctgccaagacagctgcttctgccgctgccataatccaggtggaggac
gagagcacgggagcagtggagaacatcatcgtgaagaaagaggagggcgacacctcggca
gccacgcctctgcagcagggagtggctctgacggtggagggggtggggctagacggggaa
ggggtggagactgtggagctggcggtgaacgaggagacggccgccgcagccgccaacgga
gacctgacaccagagatgatcctcagcatgatggaccggtga
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