Scomber japonicus (chub mackerel): 128359847
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Entry
128359847 CDS
T09718
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04517
IgSF CAM signaling
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128359847
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128359847
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128359847
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
128359847
Intermediate filaments
Intermediate filament-binding proteins
128359847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
CREPT
SOS1_NGEF_PH
SLATT_6
Fusion_gly
Motif
Other DBs
NCBI-GeneID:
128359847
NCBI-ProteinID:
XP_053176143
LinkDB
All DBs
Position
6:complement(17555976..17629764)
Genome browser
AA seq
2713 aa
AA seq
DB search
MANASPDLDNVEAQRQLNNNNRPISSGFWETECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLMWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIINRYEGLASDLLDWIEKTIAVISNQKFANSLAGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEVEGYYDIRRILARKENILGQWGLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEDTQVQLLSKDFGKHLLEVDDLLQKHSLQEADIGVQAERVETLNTAALKFTTIEGYQ
PCDPQVICNRVNHVSSCLEELKQLAAKRRAELEESRQLWAFFQELEESEAWIREKSSILG
AQSYGKDLSSVLGLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTAGIQERIMDV
KSEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQTL
LKKHRGVSEAIDKHRLHVVTLRKHMVALPLQYRDQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNSIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHL
ATAHPTRAMEVLVPFDGISVEWEELKRTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TSAASDQLPNDLEEAEKLINKHAALKEEIGRYEEDYERLQAMNELLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVETAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSDRIKERIDTLANRGNQNRE
LAQQWLEKLNDQWELQRFLQDCHELGDWVCEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEREGQQLIQEKPELSPVVRRKLEEIRECWQDLESTTQAKARQLFEANRA
DLLVQSYESLDQRLGQLEGQLAYVDQGQDLTSVNRQLKKLQTMECQMEEWYKEVGQLQVQ
AASIPQQTQVKETVVGQQAAVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPMAMSQEHGSSLQAVQQLMKKNQTLQRELQGHRSRIDDVLERAGIITSIRSPEADCI
RAGHDQLAGLWALLWTETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLILEQTIEDYAETIGLLSQQCRQLLEMGHPDCEQISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQREVVASSPELGQDYEHVTVLQEKFTEF
ASETGSVGQERVTAVNQMVDELIDYGHSEAATIAEWKDGVNEAWADLMELMETRAQMLAA
SHQLHKFFSDCREVLAQIEDKHRRLPEVQDRQGSTANTSTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACREHEVMQCWKELLTSCEECRVQITTETDKLRFFSMVR
DQIMWMESIICQIGTGEKPRCANCLWGVFCVSCRDVSSVEVLMNYHQSLKSEVEARSQST
MECIEMGKTLLAARNPAAEEIKEKLDKVMAKQHELTEKWDRHWEILQQLLEVHQFAQDAV
VAEAWLTAQEPFINSNELGASVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKA
EQSKLPPTPLLGRKVFLDPQDASATPSTLPRIPLSPVMRQTIYEQNEASSPPSPSPATPT
PSPTSVARRLGSTVANYTPVMNGSSYRHTLEARHGSVVGVAAGLAQPAPSSIASIATAAM
LVSANQARESTSIVRDQAVKVMSHLQPVQAARELEVKSSPYLRQPKIKHLDDAVTPLLVA
SRLEKARERGREREMMMGEIGTEKAEVAVMAEVVLQEPSRERLHSEPTRGPRGSRTDPLG
YAEPQVHQKDHRIERQLSSEQLIQARRDELPQEVWREHAERRERRTLERQTSSEQEGHGS
HEGRRRERDRHRLERQESSEHDTGHSDRRSGGGERRTTLLDIVEQLQEREAAQARGEVPR
LPNGVPEKASRPERPRARDRPKPRRRPRPKEAGETTRRSRSAPAQSSPAVPQPPTHTAHH
EGFLFRKLDIESLKKSTNSRSWVNLYCVLNKGEMGFYKDAKNTTTPYNNEPLLNLSHCHC
DVTNGYKKKKNVFTLKTKDGSEFLFHAKDEEDLKTWVSKITASITEHEEIAKWGQPQPTT
SSTDEGTRRDGSKADNRSERGGERSDRTEKIEQGEKEKEKEREKERERGERSERSDRGGK
SEGKRSEKSSKKK
NT seq
8142 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagacctggacaacgtggaagcccagcgccagctcaacaacaac
aaccgaccaatcagctctgggttttgggagacggagtgtaccagctccaagctgttcgag
tgctcccgcatcaaggccctggcagatgaacgagatgcggtgcagaagaagacttttacc
aaatgggttaactctcatttggccagagtgtcctgtcgtatatctgacctctacaacgac
ctgagggatggatacatgctcaccagactgctggaggtcctcagtggagagctactgccg
aggcctacacggggtcgtatgcggatccattgccttgagaatgtcgacaaagccctccag
ttccttaaagaacagcgggtccacctggaaaatgtcggttcacatgacatcgtcgatgga
aaccaccgcctcactctgggtctcatgtggaccatcatcctacgcttccagatccaggtg
atcaagatagagacagaggacaatagagaaacccgctctgccaaggatgcgctgctgctc
tggtgccagatgaagactgcagggtaccctgaggtcaacatccagaactttaccacctgc
tggagagacggccttgcctttaacgcactcatacatagacacagacctgacctgatagaa
ttccacaagctgacaagatccaacgcaacccacaacctccagcaagccttcaacatcgca
gagcagcacctgggcctcacgaaactcctggaccctgaagatgtgaacacagagaaccca
gatgaaaagtccatcatcacctatgtggtctcctactaccactacttctctaagatgaag
gcgctcattgtggagggcaagagggtcggcaaggtattggacaactgtattgaggccgag
aagatcatcaaccgctacgagggtctggcgtcagacttgctggactggattgagaagacc
attgcggtcatcagtaaccagaagttcgccaactcactggctggagttcagcagcagcta
caagccttcacaacctactgcaccatagagaagcccatcaagttccaggagaaggggaat
cttgaagtccttctcttcactatccaaagcaaactgagagccaacaaccagaaaccctat
gtgcctcatgatgggaagctcatctcagacatcaacaaggcctgggagaggctggaaaag
gcggagcatgagaggggcgtggctctgcgtaaagagctgattcgtcaggagaagctggag
ctgctggctcagcgcttcgaccacaaaaccacaatgagacaagcctggctcaacgaaaac
cagagactcgtatcacaggacaattttggctatgacctgccagcagttgaagcagcgatg
aagaaacacgaggccatcgaggcagacatcgcctcgtacgaagagcgaatcggcgtcgtg
gtggagcttgccgcagagatggaggtggaaggatactatgacattcggcgtatcttggca
cgtaaggagaacatcctggggcagtggggtctgctcaaagagctggtggctgggaggagg
acacggctggagaagaacctggccctgcagaagacgtttcaggacatggtctatatgatc
gactggatggaggacactcaggtccagttgctgtcaaaggactttgggaagcatctgttg
gaggtggacgacttgctgcagaaacacagcctgcaggaagctgatattggcgtgcaggcc
gagagggtcgagaccctcaacactgctgcactcaaattcaccaccatagaaggttaccaa
ccatgtgacccacaggtgatctgtaaccgtgtcaaccatgtctcttcctgtctggaggag
ctgaaacaactggcagccaaaagacgcgccgagctcgaggagtcgagacaactgtgggct
ttctttcaggagctggaagaatcagaggcctggatcagggaaaagagctccatcctggga
gctcagagctacgggaaggacctgagcagtgtgctagggttactgcaaaaacacaagact
ctggctggagaactgctggctcaccggtcactgctgcagaacaccatgaagcgtggaaag
cagatcctcagtgagaaaagtttcgggacggctgggatccaggagcgcatcatggatgtg
aagagcgagtggaagaggctagaggaccaggccgcgcagcgtcttggtcacctgcaggag
gcgctcaattttttccagttctccacagagacggacgacctggtggcctggctgcaagac
gcttaccgcctggtctccagtgaagatttcggacacgacgagtactccactcagaccctg
ctgaagaaacacagaggggtcagcgaggccatcgacaaacatcgtctgcatgtagtaacg
ctgcgtaaacacatggtggcgctgcctttgcagtaccgtgatcaggaggaggtgcaggtg
cgtatgggagaggtggagcagctgtatacagaggtagctgaggtggcagttctcagacag
cagtggcttcacgacgcccttgctgtctaccgcatgttcagcgaggtcaacgcctgcgag
ctgtggattgatgagaaggagcagtggttggacaagatggagatccctgagaggctggag
gatgtggaagtggtggcacacaggtttgagtccctggaccaggagatgaacagcctgatg
ggaaggatcctggacgttaaccagatagtccagcagctcctggatgggggtcatccgtcc
tctacagaggtcagaggttgtcaggaccacctcaactccaggtggaacagcattgtggag
ctggtcgagcagaagaaggatcagctggactccatgttgcgtctgcagaactacctgctg
gagtgtgctgagatcaagtcccaaatccaggacaaaagaaaagccatcgacgccactcag
tatgtaggcagcgacctgggaggagtcctggctctgcagagacgtctgtccaccatggag
ggggcactgtctgtcctggagcccaaactgcttcatctgcaggaggaggcggagcacctg
gccaccgcccatccgactcgagccatggaggttctcgtgccgtttgatggcatcagcgtg
gagtgggaggaacttaaacggaccctgcagggctgtgaggactcgctgatggtggctagc
aggctgcagagcttcatacaggacctggactcatttctcacctggttggtccagacacag
acatctgccgcctcagaccagctgcccaacgacctggaggaggctgagaaactcatcaac
aaacatgctgccctcaaggaagagataggacggtatgaagaggactacgagcgcctgcag
gccatgaatgagttgctggagtctgaggaggctcctctccctcaggccgccctgcagcag
tggctccagaagctcgatgtaggctggaacaagttactggagatgtgggagagcaggaga
gaagttctggtccaggctcacatcttccatctgttcctgagagacgtcaaacaggctgag
tccttcctcaacaaccaggagtcggccctcgctcacgtggagctgcccaccacagtggag
acggttgaaaccgccataaagaaacacaaggacttcaccaccaccatggagctgaacctg
cacagaatcaaagccgtgatcgaggccggagagagtctgatcagccagagcaacatctac
tctgatcgcatcaaggaacgcatcgacacccttgccaacaggggaaaccagaacagagag
ctggcccagcagtggctggaaaaactgaacgaccagtgggaacttcagaggtttctccag
gactgtcacgagctgggggactgggtgtgtgaaaagatgctgatggcgagggacagcagc
cgagacgagacccagaagcttcataagaaatggctgaagcatcaggccttcatggccgag
ttggcccagaataaggaatggctggataagattgagagggagggccagcagctgatccag
gagaaaccagagcttagtccggtggtgcggaggaagctggaggagatcagggagtgctgg
caggatctggagagcaccactcaggccaaagcgcgacagctcttcgaggccaacagggct
gacctgctggtacagagctatgaaagcctggaccagagactgggccagctggagggtcaa
ctggcttacgtagaccagggacaggacctcacctctgtcaacaggcagctcaaaaaacta
cagaccatggagtgccagatggaggagtggtacaaggaggtggggcagctccaggtgcaa
gcggcctccataccgcagcagacgcaagtcaaggagacggttgttgggcaacaggccgcc
gtggaggccaggatggtgcgtctgatcgagccgctgaaggagaggcgacgcatcctgctg
gcgtccaaggaagttcaccaagtcggacgagacctggaggatgagattttgtgggttcag
gagcgcctcccgatggccatgagtcaggagcatggttcctctctgcaggctgtccagcag
ctcatgaagaagaaccagacacttcagagggagctgcagggccacaggagccggatcgac
gacgtcctggaaagggcgggaatcataacctccatacgcagtcctgaagccgactgcatc
agggcaggtcacgaccagctagccgggctgtgggctctgctctggaccgagactgagaga
aggcagctggtactggacgccatgtatcaggcccagcagtactacttcgacacggctgaa
gtggaggcctggctgagcgagcaggagttgcacatgatgaacgaggagaaggggaaggat
gaaccgagcacactgcagctgctgaaaaaacacttgatcctggaacagaccatcgaggac
tatgccgagaccatcggcctgctgtcacagcagtgtcgacagctgctggagatgggacac
ccagactgcgagcagatcagcaagcgtcagtcgcagatcgaccgcctgtacgtgtctctg
aaggacctggtggaggagaggaagagccgcctggagcagcagtactggctctaccagctc
aacagggaggtggatgagctggagcagtggatagctcagagggaggtggtcgccagctcg
cccgaactgggtcaagactacgagcatgtcactgtcctgcaggagaaattcacagagttt
gcatcagagacgggcagcgtggggcaggaacgagtgacggccgtcaaccagatggtggat
gagctcatcgactacggccactccgaggccgccaccatcgcagaatggaaggacggggtg
aacgaggcctgggccgacctgatggagctgatggagacccgggcgcagatgctcgccgcc
tcacaccaactacacaagttcttctctgactgcagagaggttttggcccagattgaagac
aaacatcgaaggctgcccgaggttcaggatcggcagggcagcactgccaacaccagcacc
ctgcagagactcctgcacagctttgagcaggacatacagctgctggtcacacaggtgcgt
cagctgcaggagagtgcggcccagctgaggacggtgtacgccggtgagaaggctgaagcc
atcgcctgccgcgagcacgaagtgatgcagtgctggaaggagctgctgacgtcctgcgag
gagtgtcgggtgcagatcaccacggagacggacaagctgaggttcttcagcatggtccga
gatcagatcatgtggatggaatcgatcatctgtcagatagggacaggagagaagccaagg
tgtgctaactgtttgtggggggttttctgtgtttcctgcagggacgtgtcttcagtagaa
gtgctgatgaactatcaccagagtctaaagagcgaagtggaggctcgcagccagagcacc
atggagtgtatcgagatgggcaagacgctgctggctgctagaaaccctgcagctgaagag
atcaaggagaagctggacaaggtgatggctaaacaacatgagctgactgagaagtgggac
aggcactgggaaatcctacagcaattgttggaagttcaccagtttgctcaggacgcggtg
gtggcagaggcgtggctgacggcgcaggaaccgttcattaacagcaacgagctcggagcg
agcgtagacgaggttgagcagctgattcgtcgtcatgaagctttccgcaaagctgccgcc
acctgggaggagcgtttcagctcactgcgacgactcaccacggtagaaaagttgaaagca
gagcaaagtaaacttcccccaacccccctgctggggcgtaaagtcttcctagacccccaa
gatgcctcagccactccctccaccctcccccgtatccctctctcccccgtcatgagacag
accatctacgagcaaaacgaagccagctctcctccctcgccgtcgcctgccaccccgaca
ccctcgcctacatccgtggctcgccggctgggctcgacggtggccaactacacccctgtg
atgaacggctccagttaccgccacaccctggaggcgcggcatggcagcgtggtgggcgtg
gctgcgggacttgcccagcccgctccctcctcaattgcctcaatcgccacggcagccatg
ctcgtctcagccaaccaggcgcgagaaagcaccagcatagtgagagaccaggcagtgaag
gtgatgagtcacctacagccagtgcaggccgcgagggaactggaggtgaaatcatccccg
tatctacggcaacccaaaatcaaacacctggacgacgcggtgacaccgctgctcgtggcc
agccggctggagaaagcgagagagagagggagggagagagagatgatgatgggagagata
gggacagagaaagcggaggtggctgtgatggctgaggtggtgctccaggagccaagccgc
gagagactacacagtgagcccaccagagggccccgggggtccaggactgacccattgggc
tatgcagagccccaagtccaccagaaggaccacaggatagaacggcagctgtcaagcgag
cagctgatccaggcgcgcagggatgagctgcctcaggaggtgtggagggaacatgcggag
aggcgggagagacggacgctggagaggcaaacgtccagcgagcaagagggccacgggagc
catgaggggcggcggagagagagggaccgacaccggctagagagacaggaatccagcgaa
cacgacaccggacactcggacagacgctcaggaggaggagagagaagaaccaccttatta
gatattgtggagcagctgcaagaaagagaagctgcccaggcccgtggcgaagtgccccgc
ctgcctaacggggtaccagagaaggcttcccgtcccgaacggcctcgagctcgggacaga
cccaaaccacggcgccgaccgcgccccaaagaggcaggagagacgacacgacggtccagg
tccgccccggcccagagcagcccggcggtcccccagccaccaacacacactgcacatcac
gagggcttccttttccgaaagctagacatcgagagcctgaagaagagcaccaatagcagg
tcttgggtcaatctgtactgcgtgctgaacaaaggggagatgggtttctacaaggatgcc
aagaacaccaccacaccctacaacaatgagccgctgctcaacctctcccactgccactgc
gacgtcaccaacggctacaagaagaagaagaacgtcttcacacttaaaacgaaggatggc
agcgagtttttgtttcatgcaaaagatgaggaggacctcaaaacgtgggtgtccaaaatc
accgccagtattacggagcacgaggagattgccaaatggggtcagccccaaccaactacc
tcatccactgacgagggcacgcggcgcgacggcagcaaggcggacaacagatcggaacga
ggcggcgagcgctcggaccgcactgagaagatcgagcagggcgagaaagaaaaggagaaa
gaacgcgagaaggagagagagagaggagaaaggtcagagaggtcagatcggggcgggaag
tcggaaggaaagcgctcggagaagtccagtaagaaaaagtga
DBGET
integrated database retrieval system
