Scomber japonicus (chub mackerel): 128359847
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Entry
128359847 CDS
T09718
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128359847
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sjo04812
]
128359847
Cytoskeleton proteins [BR:
sjo04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
128359847
Intermediate filaments
Intermediate filament-binding proteins
128359847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
CREPT
SOS1_NGEF_PH
SLATT_6
Fusion_gly
Motif
Other DBs
NCBI-GeneID:
128359847
NCBI-ProteinID:
XP_053176143
LinkDB
All DBs
Position
6:complement(17555976..17629764)
Genome browser
AA seq
2713 aa
AA seq
DB search
MANASPDLDNVEAQRQLNNNNRPISSGFWETECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVSCRISDLYNDLRDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLMWTIILRFQIQVIKIETEDNRETRSAKDALLL
WCQMKTAGYPEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNIA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIINRYEGLASDLLDWIEKTIAVISNQKFANSLAGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHDGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEVEGYYDIRRILARKENILGQWGLLKELVAGRRTRLEKNLALQKTFQDMVYMI
DWMEDTQVQLLSKDFGKHLLEVDDLLQKHSLQEADIGVQAERVETLNTAALKFTTIEGYQ
PCDPQVICNRVNHVSSCLEELKQLAAKRRAELEESRQLWAFFQELEESEAWIREKSSILG
AQSYGKDLSSVLGLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTAGIQERIMDV
KSEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLVAWLQDAYRLVSSEDFGHDEYSTQTL
LKKHRGVSEAIDKHRLHVVTLRKHMVALPLQYRDQEEVQVRMGEVEQLYTEVAEVAVLRQ
QWLHDALAVYRMFSEVNACELWIDEKEQWLDKMEIPERLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSTEVRGCQDHLNSRWNSIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQDKRKAIDATQYVGSDLGGVLALQRRLSTMEGALSVLEPKLLHLQEEAEHL
ATAHPTRAMEVLVPFDGISVEWEELKRTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TSAASDQLPNDLEEAEKLINKHAALKEEIGRYEEDYERLQAMNELLESEEAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVETAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSDRIKERIDTLANRGNQNRE
LAQQWLEKLNDQWELQRFLQDCHELGDWVCEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEREGQQLIQEKPELSPVVRRKLEEIRECWQDLESTTQAKARQLFEANRA
DLLVQSYESLDQRLGQLEGQLAYVDQGQDLTSVNRQLKKLQTMECQMEEWYKEVGQLQVQ
AASIPQQTQVKETVVGQQAAVEARMVRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPMAMSQEHGSSLQAVQQLMKKNQTLQRELQGHRSRIDDVLERAGIITSIRSPEADCI
RAGHDQLAGLWALLWTETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLILEQTIEDYAETIGLLSQQCRQLLEMGHPDCEQISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQREVVASSPELGQDYEHVTVLQEKFTEF
ASETGSVGQERVTAVNQMVDELIDYGHSEAATIAEWKDGVNEAWADLMELMETRAQMLAA
SHQLHKFFSDCREVLAQIEDKHRRLPEVQDRQGSTANTSTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACREHEVMQCWKELLTSCEECRVQITTETDKLRFFSMVR
DQIMWMESIICQIGTGEKPRCANCLWGVFCVSCRDVSSVEVLMNYHQSLKSEVEARSQST
MECIEMGKTLLAARNPAAEEIKEKLDKVMAKQHELTEKWDRHWEILQQLLEVHQFAQDAV
VAEAWLTAQEPFINSNELGASVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKA
EQSKLPPTPLLGRKVFLDPQDASATPSTLPRIPLSPVMRQTIYEQNEASSPPSPSPATPT
PSPTSVARRLGSTVANYTPVMNGSSYRHTLEARHGSVVGVAAGLAQPAPSSIASIATAAM
LVSANQARESTSIVRDQAVKVMSHLQPVQAARELEVKSSPYLRQPKIKHLDDAVTPLLVA
SRLEKARERGREREMMMGEIGTEKAEVAVMAEVVLQEPSRERLHSEPTRGPRGSRTDPLG
YAEPQVHQKDHRIERQLSSEQLIQARRDELPQEVWREHAERRERRTLERQTSSEQEGHGS
HEGRRRERDRHRLERQESSEHDTGHSDRRSGGGERRTTLLDIVEQLQEREAAQARGEVPR
LPNGVPEKASRPERPRARDRPKPRRRPRPKEAGETTRRSRSAPAQSSPAVPQPPTHTAHH
EGFLFRKLDIESLKKSTNSRSWVNLYCVLNKGEMGFYKDAKNTTTPYNNEPLLNLSHCHC
DVTNGYKKKKNVFTLKTKDGSEFLFHAKDEEDLKTWVSKITASITEHEEIAKWGQPQPTT
SSTDEGTRRDGSKADNRSERGGERSDRTEKIEQGEKEKEKEREKERERGERSERSDRGGK
SEGKRSEKSSKKK
NT seq
8142 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgcctccccagacctggacaacgtggaagcccagcgccagctcaacaacaac
aaccgaccaatcagctctgggttttgggagacggagtgtaccagctccaagctgttcgag
tgctcccgcatcaaggccctggcagatgaacgagatgcggtgcagaagaagacttttacc
aaatgggttaactctcatttggccagagtgtcctgtcgtatatctgacctctacaacgac
ctgagggatggatacatgctcaccagactgctggaggtcctcagtggagagctactgccg
aggcctacacggggtcgtatgcggatccattgccttgagaatgtcgacaaagccctccag
ttccttaaagaacagcgggtccacctggaaaatgtcggttcacatgacatcgtcgatgga
aaccaccgcctcactctgggtctcatgtggaccatcatcctacgcttccagatccaggtg
atcaagatagagacagaggacaatagagaaacccgctctgccaaggatgcgctgctgctc
tggtgccagatgaagactgcagggtaccctgaggtcaacatccagaactttaccacctgc
tggagagacggccttgcctttaacgcactcatacatagacacagacctgacctgatagaa
ttccacaagctgacaagatccaacgcaacccacaacctccagcaagccttcaacatcgca
gagcagcacctgggcctcacgaaactcctggaccctgaagatgtgaacacagagaaccca
gatgaaaagtccatcatcacctatgtggtctcctactaccactacttctctaagatgaag
gcgctcattgtggagggcaagagggtcggcaaggtattggacaactgtattgaggccgag
aagatcatcaaccgctacgagggtctggcgtcagacttgctggactggattgagaagacc
attgcggtcatcagtaaccagaagttcgccaactcactggctggagttcagcagcagcta
caagccttcacaacctactgcaccatagagaagcccatcaagttccaggagaaggggaat
cttgaagtccttctcttcactatccaaagcaaactgagagccaacaaccagaaaccctat
gtgcctcatgatgggaagctcatctcagacatcaacaaggcctgggagaggctggaaaag
gcggagcatgagaggggcgtggctctgcgtaaagagctgattcgtcaggagaagctggag
ctgctggctcagcgcttcgaccacaaaaccacaatgagacaagcctggctcaacgaaaac
cagagactcgtatcacaggacaattttggctatgacctgccagcagttgaagcagcgatg
aagaaacacgaggccatcgaggcagacatcgcctcgtacgaagagcgaatcggcgtcgtg
gtggagcttgccgcagagatggaggtggaaggatactatgacattcggcgtatcttggca
cgtaaggagaacatcctggggcagtggggtctgctcaaagagctggtggctgggaggagg
acacggctggagaagaacctggccctgcagaagacgtttcaggacatggtctatatgatc
gactggatggaggacactcaggtccagttgctgtcaaaggactttgggaagcatctgttg
gaggtggacgacttgctgcagaaacacagcctgcaggaagctgatattggcgtgcaggcc
gagagggtcgagaccctcaacactgctgcactcaaattcaccaccatagaaggttaccaa
ccatgtgacccacaggtgatctgtaaccgtgtcaaccatgtctcttcctgtctggaggag
ctgaaacaactggcagccaaaagacgcgccgagctcgaggagtcgagacaactgtgggct
ttctttcaggagctggaagaatcagaggcctggatcagggaaaagagctccatcctggga
gctcagagctacgggaaggacctgagcagtgtgctagggttactgcaaaaacacaagact
ctggctggagaactgctggctcaccggtcactgctgcagaacaccatgaagcgtggaaag
cagatcctcagtgagaaaagtttcgggacggctgggatccaggagcgcatcatggatgtg
aagagcgagtggaagaggctagaggaccaggccgcgcagcgtcttggtcacctgcaggag
gcgctcaattttttccagttctccacagagacggacgacctggtggcctggctgcaagac
gcttaccgcctggtctccagtgaagatttcggacacgacgagtactccactcagaccctg
ctgaagaaacacagaggggtcagcgaggccatcgacaaacatcgtctgcatgtagtaacg
ctgcgtaaacacatggtggcgctgcctttgcagtaccgtgatcaggaggaggtgcaggtg
cgtatgggagaggtggagcagctgtatacagaggtagctgaggtggcagttctcagacag
cagtggcttcacgacgcccttgctgtctaccgcatgttcagcgaggtcaacgcctgcgag
ctgtggattgatgagaaggagcagtggttggacaagatggagatccctgagaggctggag
gatgtggaagtggtggcacacaggtttgagtccctggaccaggagatgaacagcctgatg
ggaaggatcctggacgttaaccagatagtccagcagctcctggatgggggtcatccgtcc
tctacagaggtcagaggttgtcaggaccacctcaactccaggtggaacagcattgtggag
ctggtcgagcagaagaaggatcagctggactccatgttgcgtctgcagaactacctgctg
gagtgtgctgagatcaagtcccaaatccaggacaaaagaaaagccatcgacgccactcag
tatgtaggcagcgacctgggaggagtcctggctctgcagagacgtctgtccaccatggag
ggggcactgtctgtcctggagcccaaactgcttcatctgcaggaggaggcggagcacctg
gccaccgcccatccgactcgagccatggaggttctcgtgccgtttgatggcatcagcgtg
gagtgggaggaacttaaacggaccctgcagggctgtgaggactcgctgatggtggctagc
aggctgcagagcttcatacaggacctggactcatttctcacctggttggtccagacacag
acatctgccgcctcagaccagctgcccaacgacctggaggaggctgagaaactcatcaac
aaacatgctgccctcaaggaagagataggacggtatgaagaggactacgagcgcctgcag
gccatgaatgagttgctggagtctgaggaggctcctctccctcaggccgccctgcagcag
tggctccagaagctcgatgtaggctggaacaagttactggagatgtgggagagcaggaga
gaagttctggtccaggctcacatcttccatctgttcctgagagacgtcaaacaggctgag
tccttcctcaacaaccaggagtcggccctcgctcacgtggagctgcccaccacagtggag
acggttgaaaccgccataaagaaacacaaggacttcaccaccaccatggagctgaacctg
cacagaatcaaagccgtgatcgaggccggagagagtctgatcagccagagcaacatctac
tctgatcgcatcaaggaacgcatcgacacccttgccaacaggggaaaccagaacagagag
ctggcccagcagtggctggaaaaactgaacgaccagtgggaacttcagaggtttctccag
gactgtcacgagctgggggactgggtgtgtgaaaagatgctgatggcgagggacagcagc
cgagacgagacccagaagcttcataagaaatggctgaagcatcaggccttcatggccgag
ttggcccagaataaggaatggctggataagattgagagggagggccagcagctgatccag
gagaaaccagagcttagtccggtggtgcggaggaagctggaggagatcagggagtgctgg
caggatctggagagcaccactcaggccaaagcgcgacagctcttcgaggccaacagggct
gacctgctggtacagagctatgaaagcctggaccagagactgggccagctggagggtcaa
ctggcttacgtagaccagggacaggacctcacctctgtcaacaggcagctcaaaaaacta
cagaccatggagtgccagatggaggagtggtacaaggaggtggggcagctccaggtgcaa
gcggcctccataccgcagcagacgcaagtcaaggagacggttgttgggcaacaggccgcc
gtggaggccaggatggtgcgtctgatcgagccgctgaaggagaggcgacgcatcctgctg
gcgtccaaggaagttcaccaagtcggacgagacctggaggatgagattttgtgggttcag
gagcgcctcccgatggccatgagtcaggagcatggttcctctctgcaggctgtccagcag
ctcatgaagaagaaccagacacttcagagggagctgcagggccacaggagccggatcgac
gacgtcctggaaagggcgggaatcataacctccatacgcagtcctgaagccgactgcatc
agggcaggtcacgaccagctagccgggctgtgggctctgctctggaccgagactgagaga
aggcagctggtactggacgccatgtatcaggcccagcagtactacttcgacacggctgaa
gtggaggcctggctgagcgagcaggagttgcacatgatgaacgaggagaaggggaaggat
gaaccgagcacactgcagctgctgaaaaaacacttgatcctggaacagaccatcgaggac
tatgccgagaccatcggcctgctgtcacagcagtgtcgacagctgctggagatgggacac
ccagactgcgagcagatcagcaagcgtcagtcgcagatcgaccgcctgtacgtgtctctg
aaggacctggtggaggagaggaagagccgcctggagcagcagtactggctctaccagctc
aacagggaggtggatgagctggagcagtggatagctcagagggaggtggtcgccagctcg
cccgaactgggtcaagactacgagcatgtcactgtcctgcaggagaaattcacagagttt
gcatcagagacgggcagcgtggggcaggaacgagtgacggccgtcaaccagatggtggat
gagctcatcgactacggccactccgaggccgccaccatcgcagaatggaaggacggggtg
aacgaggcctgggccgacctgatggagctgatggagacccgggcgcagatgctcgccgcc
tcacaccaactacacaagttcttctctgactgcagagaggttttggcccagattgaagac
aaacatcgaaggctgcccgaggttcaggatcggcagggcagcactgccaacaccagcacc
ctgcagagactcctgcacagctttgagcaggacatacagctgctggtcacacaggtgcgt
cagctgcaggagagtgcggcccagctgaggacggtgtacgccggtgagaaggctgaagcc
atcgcctgccgcgagcacgaagtgatgcagtgctggaaggagctgctgacgtcctgcgag
gagtgtcgggtgcagatcaccacggagacggacaagctgaggttcttcagcatggtccga
gatcagatcatgtggatggaatcgatcatctgtcagatagggacaggagagaagccaagg
tgtgctaactgtttgtggggggttttctgtgtttcctgcagggacgtgtcttcagtagaa
gtgctgatgaactatcaccagagtctaaagagcgaagtggaggctcgcagccagagcacc
atggagtgtatcgagatgggcaagacgctgctggctgctagaaaccctgcagctgaagag
atcaaggagaagctggacaaggtgatggctaaacaacatgagctgactgagaagtgggac
aggcactgggaaatcctacagcaattgttggaagttcaccagtttgctcaggacgcggtg
gtggcagaggcgtggctgacggcgcaggaaccgttcattaacagcaacgagctcggagcg
agcgtagacgaggttgagcagctgattcgtcgtcatgaagctttccgcaaagctgccgcc
acctgggaggagcgtttcagctcactgcgacgactcaccacggtagaaaagttgaaagca
gagcaaagtaaacttcccccaacccccctgctggggcgtaaagtcttcctagacccccaa
gatgcctcagccactccctccaccctcccccgtatccctctctcccccgtcatgagacag
accatctacgagcaaaacgaagccagctctcctccctcgccgtcgcctgccaccccgaca
ccctcgcctacatccgtggctcgccggctgggctcgacggtggccaactacacccctgtg
atgaacggctccagttaccgccacaccctggaggcgcggcatggcagcgtggtgggcgtg
gctgcgggacttgcccagcccgctccctcctcaattgcctcaatcgccacggcagccatg
ctcgtctcagccaaccaggcgcgagaaagcaccagcatagtgagagaccaggcagtgaag
gtgatgagtcacctacagccagtgcaggccgcgagggaactggaggtgaaatcatccccg
tatctacggcaacccaaaatcaaacacctggacgacgcggtgacaccgctgctcgtggcc
agccggctggagaaagcgagagagagagggagggagagagagatgatgatgggagagata
gggacagagaaagcggaggtggctgtgatggctgaggtggtgctccaggagccaagccgc
gagagactacacagtgagcccaccagagggccccgggggtccaggactgacccattgggc
tatgcagagccccaagtccaccagaaggaccacaggatagaacggcagctgtcaagcgag
cagctgatccaggcgcgcagggatgagctgcctcaggaggtgtggagggaacatgcggag
aggcgggagagacggacgctggagaggcaaacgtccagcgagcaagagggccacgggagc
catgaggggcggcggagagagagggaccgacaccggctagagagacaggaatccagcgaa
cacgacaccggacactcggacagacgctcaggaggaggagagagaagaaccaccttatta
gatattgtggagcagctgcaagaaagagaagctgcccaggcccgtggcgaagtgccccgc
ctgcctaacggggtaccagagaaggcttcccgtcccgaacggcctcgagctcgggacaga
cccaaaccacggcgccgaccgcgccccaaagaggcaggagagacgacacgacggtccagg
tccgccccggcccagagcagcccggcggtcccccagccaccaacacacactgcacatcac
gagggcttccttttccgaaagctagacatcgagagcctgaagaagagcaccaatagcagg
tcttgggtcaatctgtactgcgtgctgaacaaaggggagatgggtttctacaaggatgcc
aagaacaccaccacaccctacaacaatgagccgctgctcaacctctcccactgccactgc
gacgtcaccaacggctacaagaagaagaagaacgtcttcacacttaaaacgaaggatggc
agcgagtttttgtttcatgcaaaagatgaggaggacctcaaaacgtgggtgtccaaaatc
accgccagtattacggagcacgaggagattgccaaatggggtcagccccaaccaactacc
tcatccactgacgagggcacgcggcgcgacggcagcaaggcggacaacagatcggaacga
ggcggcgagcgctcggaccgcactgagaagatcgagcagggcgagaaagaaaaggagaaa
gaacgcgagaaggagagagagagaggagaaaggtcagagaggtcagatcggggcgggaag
tcggaaggaaagcgctcggagaagtccagtaagaaaaagtga
DBGET
integrated database retrieval system
