Scomber japonicus (chub mackerel): 128360115
Help
Entry
128360115 CDS
T09718
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128360115 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
sjo04091
]
128360115 (frem2b)
Lectins [BR:
sjo04091
]
C-Type lectins
Lecticans
128360115 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
TMEM154
LAX
DUF6522
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
128360115
NCBI-ProteinID:
XP_053176422
LinkDB
All DBs
Position
6:complement(21150140..21209448)
Genome browser
AA seq
3115 aa
AA seq
DB search
MAWIIPSHLHGTGAALILLAVILTGDAVAQVFDSYGLSYALRSELSEDTILVANNGIRVP
FGRSVFIDPINDLVIQVQPGDRCSITVLDNDPLSQRPGHLSPKKFPCEFGPNDVKYSHFG
SRSPPRDRVKLQLRYDTQTDTIIIPFMMEVEVIFTQLEVLTKNMPLTVEKVLGISNPIDR
RILEFTYDRNAQQCKIASLSSGSMLPRYGKLIEEGSLGTMVDCDDFINLNIRYQHTFALK
SPNRDYIPMLVELHDKEGNLLKQEFFQILVRIKEGEDNTAPKPSFVAMMMMEVDQFVMTA
ITTDMLAAEDVESNPDELIFNITSPLSYEEGYIVSTDDRNLPITSFYQGDLKDLKIAYKP
PAVDSDTERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTKNTGQLLYEGQSRPL
SSSQNLEISDEDNLDKVKIAVIDGLRHGDLTVLGSRRKFFTPADLSAGVVIYQHDGSDTY
SDNIIFRMTDGANEVEFLFPITVVPTDDEPPIINANTGLNLFKNQMMPISSLMLSAADID
SEDSTIKFTIEPPFSTIGQVLLRQSEAPEDPSTWKFNTQDEMYEKAVTEWLQQDITDGKL
FYKHTGPHSTSTVMDQFVFRVQDDNDPPNQSSESSFIVKILPVDDLPPEIYPGTTLQMTV
HEYQLTHFRKKLLRYTDLDSEDRDLKYTIIQPPTDTDENSPVVLGALVLTEKPNTVVNTF
TQAQINHHKIAYRPPDLELGITIHVLQFRYIVEDISGNSVDGVFTIFLKPVDNMPPQITN
SGFTVFERGTHIITSAELDTSDTDTDSKVISFTITQPPLHGQMQFTFTVMKKGDTFRLED
IGNGRISYIHNGDESTVDSIQIDVSDGVHVVPIIIKISVKPIDDETPTISLPAGTIGSYI
DVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPSLGEILVRGVPSGTFTQADIINGLV
VYAHTNGEIGFTTKEDFFNLTLTDMSDEWTVGGNKITGVRVHVTILPLDSQAPEVFVGPQ
FTVVEGGKNVIQILYISADDVDTPNDDLLCTIIVQPTSGYVENISPAPGSEKSRSGTAIS
AFTIKDIRQNHISYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPISIIPSNDEKPEIY
MREFVVMEGMNIVIDTPILNGADADLPSDRLTFIITKPPKHGFILNQLTTGTVPVSNFTL
DQIREASSIVYEHDDSETTEDSFDIVLTDGKFSVEKTVIVMIIPVDDETPRMVINDGLEI
EIGDMKVINSNVLKATDLDSEDSSLTYIIRYGPGQGYLQKTMPSGTMQNITVGMNFTQNE
VDQGLIVYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVISKGVSLKEG
GRVSLTTDLLSTSDLNSPDEHLVFTITRAPMRGHLECTDTPGMPISSFTQLQLAGNKVYY
IHTADDEVKMDSFEFEVTDGYNPVFRTFRISITDVDNKKPVVTVHGLVVTEGENKLITPF
ELTVEDRDTVDRLLKFTVTQIPVHGHLLFNNTRPVTSFTKQDLNENMISYKHDGTESAED
SFSFTVTDGTHTDFYVFPDTAFGTRKPQMMKITVLPVDNGVPQIVVNKGAPTLRVLETGH
LGFVFTSKTLKAEDRDSIQDSVTFRISVAPEHGYLINLGKGNATITAFTQAEIDDMNICY
VLRDSDNATNDIFYFSIEDNGGNKLRNQQFRLNWAWISLEKEHYVVDEEVKFLEVVLRRR
GYLGETSFVSIGTKDGTAEKDKDFRGKSQKQVQFNPGQTTATWKVRIQSDSEYEVSETFQ
IILSEPVMAALEYPEVATVEILDPDDESTVYIPSAAYNIEEDIGELLIPVHRSGDVSQEL
MVICYTQQVSATGTVPTTVLSYSDYISRPEEHHSILRFDKGEVEKSCRVVIIDDSLYEDE
ESFNVTLSMPMGGRLGSEFPTARITIIPDMDDAPVFYFGNTDYHVDESDGFVEVQVWRTG
TDLSKGGTVTVRSRKTDPVSAEAGVDYVGISRNLDFAPGVTMQTFRVTILDDLGQPVLEG
PEKFELVLRMPMNGILGEPNKATIFINDSVSDLPKVQFRDAVYVGNENSGQISATVYRSG
DISYKSTVRCYSRQGTAQVMMDFNERPNTDASIITFLPGEIEKPCVLVLVDDTEHEEEEE
LRLVLGRPKSESPFGASIGGQNEILIKINDDADKAIIKFGETKFSVNEPKESGQISVVKI
PVLRVGDTSKVSVVRIHTKDGSATSGEDYHPISEEIVFKEGDTEHYVEVEILYDGVREMR
EALTVHLKPDENMVAETKMSKAIIYIEETSSMADVTFPSVPRVVSLLHYDDIDRTRDSLP
VAGYPVICVTACNPKHPDYDKTGSICVSENINNTLTRYRWLVSAPTGSDGVTSPMREVDF
DTFFTSSKLITLDSVYFQHGSRVQCAARAVNSNGDEGLELSSPIVSISMDEGMCQPGVVG
TVGAEPFSAKLRYTGAEDTDHPNLIKLTITMPHIDGMLPVVSTRSLSNFELTLSPDGTRV
GNHRCSNLLDYAEVKTRYGFLTEATKNPEVIGETSPYQYSTSLRGFSTLRFYRNLNLEAC
LWEFSSYYDMSELLSDCGGNIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGAGGWQHFD
LQSELRLTFVYDTAILWRDGIGSPPEAELQGALYPTSMRINDQGRLVVNFRTEARFRGLF
VFGHPASTLTSMVMCPDHPGLTFNLSLVRNEPTYNQPIQQWTFVSDFAVRDYSGTYTVKL
IACTSPISLEYTIPPVCNPREPLTFDLDIRFQQVSDPVAAEFSLNTQMILLAKRTLWLSD
GSMGFGQESDTAFSQGDLIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPSNF
EFGCLADAPSLLYRFKIIDKAQPETQAKSFGNVAFNAFLAVDDPGALALVRQPGSDGFRM
DSSALFQVSAGREWYIHTIYTVRSRDNANRGIGKRSLEYHSLSQHTNVQLKGQNRHRRSA
NDVPDIIEDIGVSNNRGTNILHIALDQSSQRRTSPEREIFTKGIIPRELNQKDDSDDRLV
LIIGVFVGLLLTVLIIIVVVLLVRSKREKKDVPTSSSSTEPMMTQGLSNSDSSEV
NT seq
9348 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattattccctcgcatctgcacgggaccggagctgctttgattctgcttgcg
gtgattctgacaggtgatgcagttgcgcaggtttttgacagctatggattatcatacgcc
ttgaggtccgagctgtcagaggacacgatattggttgccaataatgggatccgcgtgcct
ttcgggagatcagtcttcattgatcccatcaacgatttggttattcaagttcaacccggt
gatagatgcagcataacagtcctagacaatgatcccttgtctcaaaggcctggacacctg
tctccgaaaaagtttccgtgtgaattcggccccaacgacgtgaagtactctcactttggc
tccaggagtccaccgagggacagagtgaaattacaactccggtatgatacccaaacggat
accattataatacctttcatgatggaggtggaagtcattttcacacagctggaagtgcta
accaaaaacatgccactcaccgttgagaaagtgctcggcataagtaaccccatcgataga
agaatattagaatttacctatgacagaaacgcacagcaatgcaaaatcgcctctctatcc
agtggcagcatgctgcccaggtacggaaaacttatagaagagggcagccttggaacaatg
gtggattgtgatgattttattaatctgaacatccgttatcagcacacttttgccttgaag
tcaccaaacagagattacattccaatgcttgtggaattgcatgataaagagggcaatttg
ctcaagcaggaatttttccagattttagtgagaattaaagagggagaggataacacagca
cctaaaccaagctttgtggcaatgatgatgatggaagtggaccagtttgtaatgacagct
ataaccacggacatgctggctgcagaggatgttgagtctaatcctgacgaattaattttc
aacatcacatcccccctgtcctatgaggagggctacatagtgagcacagatgataggaat
ttaccaataacctcattttaccaaggagacctcaaagacttgaaaatcgcatacaaaccc
cctgctgtggattcagacactgagcggattttccagattgagtttgaggttgtagacaca
gagggggctgtgtcagacccttttgctttcatgattgttgttaagcctatgaacacattg
gctcctgtggtgactaaaaacactggccagttactgtatgagggacagtctagacccctg
tctagttcacaaaatctggaaatcagtgatgaggacaatttagacaaagtcaaaatagct
gtaattgatgggctgaggcatggggacttaactgttctgggctccaggaggaaatttttc
acccctgctgacctcagtgctggagttgtcatttatcaacatgacggcagtgacacatac
agtgacaatattattttcaggatgacagatggtgcaaatgaggtggagtttctgtttcca
atcactgttgttccaactgatgatgagcctcctataatcaatgccaacactggtttgaat
ttattcaaaaaccaaatgatgccaatctcctcactcatgctcagcgcagcagacatcgat
tcagaggattctaccataaaattcacaatagagcctccgttttccacaatcggacaggtg
ttgctgcgtcagtccgaggccccagaggacccatcaacctggaagtttaatacacaggat
gaaatgtatgagaaagcagtgactgagtggttgcagcaggacataactgatggtaaactg
ttttacaaacacactggcccccacagtaccagcacagtcatggatcagtttgtgtttaga
gttcaagatgacaatgacccaccaaatcaatcaagtgagagctcattcatcgtcaaaatt
ctcccagttgatgacctcccgcctgaaatatatccaggtacaactctgcaaatgactgtg
cacgagtatcagcttactcacttccgaaagaaattacttcgttacactgacctcgactca
gaggatcgggatctcaaatatacaatcatccagccaccgacggatacagatgagaatagc
cctgttgtattgggagctctggtattaactgaaaagccaaacactgtagtcaatactttc
actcaggcacaaattaaccaccataaaatagcttacagaccacctgatcttgagcttgga
ataaccatacatgttttgcagtttagatatattgtggaagatatttccggaaatagtgtt
gatggggttttcactatatttttaaagcctgtggacaacatgccacctcaaataaccaac
tctgggtttactgtgtttgaacgtggtacacatatcatcacaagtgctgagctggacacc
tcagacacagacacagacagcaaagtgatatcttttactattactcagcctccgctgcat
ggccagatgcagtttacattcactgttatgaaaaaaggagacactttccgcttagaggat
attggaaatggtagaatttcctacatccacaatggagatgaatcaacagttgattcaata
caaattgatgtcagtgatggggttcacgttgtcccaattattataaagattagtgtgaag
cctattgatgatgagactccaactatcagtcttccggctggcacaattggctcctatata
gatgtactggaaaatggggcaacagaaattacaagtaatgtaattcaggggagagatgag
gacacagatgaccttcgtttgaccttcattgttgaggacccgccatcattaggtgaaatc
ctggtgagaggggtcccatctggtacattcacccaagctgatatcatcaacggccttgtg
gtctatgctcataccaatggggagataggctttacaacaaaggaggactttttcaatctc
acactgacggacatgtctgatgagtggactgttggaggcaataagatcacaggtgtcaga
gtgcatgtaactattcttcccttggacagccaggctccagaggtttttgtggggccacag
ttcactgttgtggaaggagggaaaaatgtaattcaaatcctttatataagcgctgatgat
gtcgacacccccaatgatgacctcctttgtacaatcattgtacagccgacttcaggctat
gtagaaaatatctccccagccccaggctcagagaaatccaggtctgggacagctattagt
gctttcaccatcaaggatataagacagaatcacatttcctatgttcaaagcattcacaaa
ggagtggagcctgtggaggacaggtttacattcagatgctctgatggcatcaatttctct
gaaaggcattttttccctatctccataatcccctctaatgatgaaaagcctgaaatttac
atgagagagtttgtagttatggagggcatgaacatagtcattgacacccccattctgaat
ggtgctgatgcagatctcccctctgatcggctcacattcattatcaccaaacctccaaag
catggatttattctgaatcagctcactaccggcactgtgcctgtctctaacttcaccttg
gatcagatcagggaggcctcaagcattgtgtatgagcatgatgactcagagaccacagag
gacagctttgatattgttctcacagatggaaagttcagtgtggagaaaacggtaatagtt
atgattatccccgtagacgatgaaaccccgaggatggttatcaatgatggccttgaaatt
gagataggtgacatgaaagtcataaacagcaacgttttaaaagctactgatctggactct
gaggatagttcgctaacttacatcattcgctatgggcctggtcaggggtatttacagaaa
acaatgccctctgggacgatgcaaaatatcactgttggcatgaacttcacacagaatgaa
gtggaccagggtttgattgtgtacatacataatgggcaagagggcattcgcgacctcatc
aagtttgatgtgacagatggtattaaccctttgattgacagatacttttatgttacagtg
ggtggcattgacatggttttcccagatgtaatcagtaaaggtgtatcactcaaagagggt
ggcagggtttctctgacaacagacctgctcagtaccagcgacctaaacagtccagatgaa
cacttggtttttacaatcacccgggctccgatgagaggacatctggagtgcacagacaca
cctgggatgccaatttcatcctttacacagctccagctggccggcaacaaagtctactac
atccacactgctgacgatgaggtgaaaatggacagctttgaatttgaagtgactgatggc
tacaaccctgtgtttcgcactttccgcatttccatcactgatgtagacaacaaaaagcct
gtggtgactgtacatggcctggtggtgacagagggagagaacaaactcatcacgcctttt
gagctaacagtagaggacagagacactgttgaccgcctcttgaaattcacagtcactcaa
atcccagttcatggtcacctgctcttcaacaacacccggcctgtcacctccttcacaaag
caggatctgaatgagaacatgatcagctacaaacatgatggcacagagagtgctgaggac
agtttctccttcactgtcactgatggcactcacacagacttctatgtcttccctgataca
gcatttgggactcgaaagccccaaatgatgaagataactgtcctcccagtggataatgga
gtaccgcagattgtggttaacaagggtgctccaaccttgcgggttctagagactggtcac
ttggggtttgtgttcaccagtaagactcttaaagcagaagacagagacagcattcaggat
tcggtgacctttaggattagtgttgctccagagcacggctacctgatcaacctcggcaaa
ggaaatgccactatcactgccttcacacaagctgaaattgatgacatgaacatatgctat
gttctgagggacagtgacaacgctacaaatgacatcttctacttctcaattgaagacaat
ggaggcaacaaactgaggaaccagcagtttcgtctgaactgggcttggatctctttagag
aaggaacactacgtggtggatgaagaggtcaagttcctggaggtggtgctaagacgtcga
ggctacctgggggagacttcgtttgttagtattggcaccaaggatggcactgcagaaaag
gacaaagatttccgggggaaatctcagaaacaggtgcagttcaatccgggccagaccaca
gccacctggaaggtccggatccagtcagatagcgagtatgaggtgtcagagaccttccag
atcattctgtctgagcctgtgatggcagcccttgaatacccagaggtcgctactgtggag
atcctcgaccctgatgacgagtcaacagtgtacattccctcagctgcatacaacatagaa
gaggacattggtgagctgcttatccctgtgcacaggagtggtgatgtcagtcaggagctc
atggtcatctgctacacccagcaagtttcagccacaggcacagtccccaccacagtgttg
tcctactctgattacatctccaggcctgaggaacatcacagcattctccgattcgacaag
ggagaggtggagaaatcctgccgagttgtgatcatcgatgactcgctgtatgaagacgag
gaaagcttcaatgtcaccctcagcatgcccatggggggccgtctgggctcagagttccct
acagccagaatcactatcatacccgatatggatgatgctcctgtcttctactttggcaac
acagactaccatgtggatgagagcgatggctttgtggaagtgcaggtgtggaggacagga
actgatctttccaaaggaggaaccgttacagtgcgctcgagaaagacagatcctgtctca
gctgaggctggtgtggattacgtggggatcagccggaatctggacttcgcaccgggggtc
accatgcagacgtttcgtgtgaccatcttggatgacttgggccagccggtactggagggg
ccagagaagtttgagctggtactcaggatgcccatgaatggcatccttggagagccaaac
aaggctactatcttcatcaatgactctgtttcagacttgccaaaggtgcagttccgtgat
gctgtgtatgtgggcaatgagaactcaggacagatctcggctactgtataccgcagtggt
gatatcagctacaagtccacagtacgatgctacagcagacaggggacagcccaggtcatg
atggatttcaatgagagacctaacaccgacgcctccatcatcaccttcttaccaggagag
attgaaaagccttgtgttctggtgctagttgatgacacggaacatgaagaagaggaggag
ctgcgtcttgtgttgggaaggcccaaaagtgaatctccatttggagcatctattgggggg
cagaatgaaatacttatcaagataaatgatgatgcagacaaggctattattaaatttggg
gagaccaaattcagtgtgaatgaaccaaaggaaagtggccaaatatctgtggtgaagatt
ccagtgctgcgtgttggagacacctccaaggtttctgttgttcgaattcacaccaaggat
ggatctgctacttctggggaagactatcatcctatatccgaggaaattgtgttcaaagaa
ggtgacacagagcactatgtggaggtggagattttatatgatggtgttagagaaatgagg
gaggcactcactgtgcacctgaagcctgatgagaacatggtagcagagacaaagatgagc
aaagccataatctatatagaggaaaccagcagcatggcagatgtcaccttcccttcagtg
cccagagtggtttctctcctgcattatgatgacatcgataggaccagggactctctccct
gtggctggataccctgttatttgtgtcactgcctgtaaccccaagcatccagactatgac
aaaacaggttctatctgtgtgagtgagaacatcaacaacaccctgacccgttaccgttgg
cttgtcagtgccccaacaggctcagatggcgtcaccagtccaatgagggaagttgacttt
gataccttcttcacctcatccaagctcatcactctggattcagtctacttccagcatggt
tctagggttcagtgtgccgcaagggctgtgaactctaatggagatgaaggactggagctc
agtagccccatagtgtccatcagcatggatgagggaatgtgtcagcctggtgttgtaggc
actgtgggggctgagcccttctctgccaagctacggtacactggagcagaagacacagac
caccccaacctcatcaagctaacgatcaccatgcctcacattgatggtatgttgcctgta
gtatccaccagatccttgtctaactttgagctcacgctgagccctgatggtactcgtgtt
ggcaaccatcgctgctccaatttgttggactatgctgaagtcaagactcgctatggcttc
ctcactgaggccaccaaaaatccagaagtgattggagagacatcgccttaccaatacagc
acttccctcagaggattcagtacactacgattctacagaaatctcaatttggaggcttgt
ttgtgggaatttagcagctactatgacatgtctgagctgctcagtgattgtggaggcaac
attgggactgatggacaggtgttgaatttggtccagtcctatgtgaccttacgagttcca
ctttatgtgtcctatgtcttccactcccctgtgggagcagggggatggcagcactttgac
ttgcagtcagagctgaggctcacatttgtgtacgacactgccatcttatggagggatggt
atcggtagcccacctgaggcagaattgcaaggtgccctgtacccaactagcatgcgtata
aatgaccagggacgactagtagtcaacttccgcactgaggctcgattcagaggcctgttt
gtctttgggcatccagcttcaaccctcacctccatggtcatgtgtccggaccaccctggt
ttgacctttaacctcagtcttgtgaggaatgagccaacctacaaccagcccatccagcag
tggacatttgtttctgattttgctgtgcgtgactactctggtacgtacacagtgaagctg
atcgcctgtacatctcctatcagcctggagtacaccatccctcctgtctgcaatcccaga
gagcctcttacctttgacttggacatccgatttcagcaggttagcgaccctgtggctgct
gagttcagcctgaacacacagatgattttacttgctaaaaggacactctggctctcagat
ggctccatgggctttggacaagagagtgacactgccttctcacagggggatttaatctac
ggccgagtgatggtggatccagtgcagaatttgggcgactcttttatttgtaatatagag
aaagtcttcctctgtactggagctgatggatacgtcccaaaatacaaccccagcaacttt
gaatttggctgtctggctgatgctccatctctactctacagattcaaaataattgacaag
gcccagcctgagacccaagctaagtcatttggaaatgtagctttcaacgccttcctggca
gtggacgaccccggcgctttagctctagtgagacaacctgggtcagatggtttcagaatg
gattcctcagctctcttccaggtgtccgcagggagagagtggtacattcacactatctac
acagtccgttctcgggacaacgctaaccggggcatagggaagagaagcctggagtaccat
tcattaagccagcacacaaatgtgcaactaaagggtcaaaatcgccacagaagatctgcc
aatgatgtgccagacatcatagaggatattggcgtgagcaacaatcgtggcaccaacatc
ttgcacatcgcgctggatcagagcagccagaggaggaccagcccagagagggagatcttc
accaaagggatcattccccgtgagctcaaccagaaagacgacagtgacgacagactagtg
ttgatcattggtgtctttgtcgggctgctgctcacggtgctcatcatcattgtggtggtg
ttgctggttcggtccaagcgggagaaaaaggatgtacccacgagctccagcagcacagag
cctatgatgacacaaggcctcagtaacagtgacagctcagaggtctaa
DBGET
integrated database retrieval system
