Scomber japonicus (chub mackerel): 128360156
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Entry
128360156 CDS
T09718
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128360156 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128360156 (dhx36)
03012 Translation factors [BR:
sjo03012
]
128360156 (dhx36)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128360156 (dhx36)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128360156 (dhx36)
Translation factors [BR:
sjo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128360156 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
NB-ARC
AAA_16
PhoH
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
128360156
NCBI-ProteinID:
XP_053176497
LinkDB
All DBs
Position
6:25432447..25459096
Genome browser
AA seq
1066 aa
AA seq
DB search
MSYGYGGGGGRRGRRGGGRGGYRDGSRERWDRGGRGGGGGSRGHSSNFDEDQGGGGQRDR
PPPHLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQQITKLLNSVQNDQPAPPER
DSRESRSSMSDNWHSTANRSGHSYFDGDLPEEDKHKIKSEDEEKRHLSQAAVKDETPDRW
DEEEQQEEKEEKEEKEEEEKPRIKDKDLEFLFQEVGRDNSVDDSLKRGLQRMKSDPKYQE
MLKFREKLPSYAKKEELVQLINSNRVVVVSGETGCGKTTQVTQFILDDHINRGMGSMCRV
VCTQPRRISAISVAERVAAERAESVGNANSCGYQIRLQSRLPRRQGSILYCTTGIILQWL
RSDPLLSSVSHLVLDEIHERSLQSDVLLVIVKELLSLRDDLKIILMSATLNAEKFSKYFD
KCPMIHIPGLAFPVEEFLLEDVLEMTRFCPQNQDRRPSWKRGFWQGRNSRPEKEEKEAEY
KESWPCYARTLQGRYSDRTIEALEILDSDDKINLELVMALIRHIVLNEEEGAILVFLPGW
DNISSLNDLLMAQQMFRSDRFVIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATNIAETSI
TIDDVVYVIDGGKIKETNFDTNNNISTMAAEWVSLANAKQRKGRAGRVCPGKCYHLYNGL
RASLLDAYQLPEIMRTPLEELCLQIKILKLGFIARFLEKTLDPPTEKAVNLAIKNLVDLN
ALDRSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLGKE
KMADMRRKTLSRNSKSDHLTIVNAFQGWEEVKQRGSRYEREYCWDNFLSANTLQMLHNMK
GQFAEHLMNAGFVSSKNPKDPKSNVNSDNEKLIKAVIVAGLYPKVAMIRPSHSKKRPGVK
VYTQADGKVCIHPKSVNYEETEFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGGDIT
IQKDEGQETIAVDQWIVFRSPARIAHLVKSLKREMDSLLEEKIRNPSPVDWQNRQSKDCA
VITAIIDLITTQEKPAGSTKGYGRTWEPAPRGQHVYFNDDDDDDDD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggatacggtggcggaggtgggagaaggggtaggagaggaggaggtcgagga
gggtatagagacggtagcagagaaagatgggacagaggaggaagaggaggaggaggaggg
tcgagagggcacagctccaactttgatgaggaccaaggaggtggtggacaacgggaccgt
cctcctccccacctgaagggccgtgagatcggtctgtggtacgcaagatacggagctgtg
aggaggaaacaggctgaccggagatcgcgagcggtggtccagatggatgaggccagagag
cagcagattaccaagctgcttaactctgtccagaacgaccagcctgctcccccggagaga
gacagcagagaatccagatcctctatgtctgacaactggcattcaactgcaaacagaagt
ggccacagttactttgatggggacctgcctgaagaagataaacacaagatcaaatctgag
gacgaagagaaacgtcacctctcccaggcagctgttaaagatgagacccctgacaggtgg
gatgaagaagagcagcaggaggagaaggaggagaaggaggaaaaggaggaggaagagaaa
ccgagaataaaagacaaggatctggagttcttatttcaggaagttggtagagacaattca
gtggatgactccctaaagagaggtctgcagaggatgaaatcagatccaaagtaccaagaa
atgctgaaattcagggagaaattaccatcctatgcgaagaaagaggagctggtgcagttg
atcaactctaaccgtgtcgtggttgtgagtggggagactggatgtggcaagaccacccag
gttacccagttcatcctagacgaccatatcaaccgtggcatgggctcgatgtgccgagtg
gtttgcacgcagcctcgtcggatcagtgccatctcggtagcagaacgtgtagcagcggag
agggcagaaagtgttgggaatgcaaattcttgtggataccaaatccgcttgcagagccgg
ttaccacggagacaaggttcgatcctctactgtacaacaggcattattcttcagtggctt
cgctcagacccattgctatccagtgtcagccacttggttttagatgagatccatgagaga
agcctgcaatctgatgttttgcttgtcattgtgaaagagctgctcagcctccgagatgac
ctcaagatcatcctcatgagtgccacgctcaacgctgagaagttctctaaatattttgat
aagtgtccaatgatccacatcccaggcttggcttttccggtggaagagttcctgctcgag
gatgtgttggagatgaccaggttttgtccccagaatcaggaccgtcgcccctcctggaaa
agaggcttttggcagggacgcaactccagacctgagaaagaggagaaagaggctgaatac
aaggagagctggccttgttatgcacgcacacttcagggcagatactctgacagaaccatt
gaggcactggagatattggacagtgatgacaagattaacctggagctggtcatggcactg
atccgccatattgtgcttaatgaggaggaaggagctatcttggtctttctgcccggctgg
gacaacatcagcagtctcaatgacctactaatggctcaacagatgttcagatcagaccgg
ttcgttatcatccctttgcattccctcatgccgactgttaatcagacacaggtgttcaaa
aggcctcctcctggagtaagaaagatagtgattgctacaaatatagctgagaccagcatc
accatagatgatgttgtttatgtgattgatggagggaagattaaggaaaccaactttgac
acaaacaacaacatcagcactatggcagccgagtgggttagcctggccaatgccaaacag
aggaaaggacgcgctggcagagtatgtccagggaagtgctatcatctatacaatggtctc
agggccagcctgctggatgcctatcaattacctgaaatcatgaggacaccactggaggag
ctctgtttgcagatcaagatattgaagctcgggtttatagctcgattcttggaaaaaact
ctggaccctcctacagaaaaggctgtcaatctagccatcaagaacctggtagacctgaac
gccttggaccgttcagagaatctcacagctctggggttccacctggctcgtctgcctgtg
gagcctcacattggaaaactcatcctgttcggagctctgttgggctgccttgaccccgta
ctcaccattgcagcttcactcagcttcaaagaccctttcttcatacccctgggtaaagag
aagatggcagacatgaggagaaaaacactgtctagaaactccaagagtgaccacctcact
attgtcaatgccttccagggttgggaggaagtgaaacagcgtggttccaggtatgagagg
gagtactgctgggacaacttcctgtctgccaatacactccagatgctgcacaatatgaag
ggtcaatttgctgaacatctaatgaatgcaggtttcgtgagcagcaagaaccccaaggac
cccaaatctaacgtcaactcggacaatgaaaaattaattaaagcagtgattgttgctgga
ctgtacccaaaggtggccatgatcagaccatctcacagcaaaaagaggcccggggttaag
gtgtacacccaggctgatggaaaggtgtgtatccacccgaaatctgtcaattatgaagag
accgagttcaactatacatggctgatctatcacctaaagatgagaacgagcagtatcttc
ctgtacgattgcactgaggtgtccccgttctccctgctgttctttggaggtgacatcacc
atccagaaagacgagggccaggagaccatcgcagtggaccagtggatcgtcttcagatcg
ccagcacgcatcgctcaccttgtgaagagtctaaagagagagatggattctctgctggag
gagaaaatacgtaacccttctcccgtggactggcaaaaccgtcagtccaaagactgtgct
gtcatcacagccatcatagacctcatcactacccaggagaagcctgcaggcagcactaaa
ggctatggcagaacgtgggagcctgccccgagaggacaacacgtttacttcaatgacgat
gatgatgatgacgatgattag
DBGET
integrated database retrieval system
