Scomber japonicus (chub mackerel): 128360248
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Entry
128360248 CDS
T09718
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128360248 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128360248 (prpf8)
Spliceosome [BR:
sjo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128360248 (prpf8)
Complex C
U5 SnRNP specific factors
128360248 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
128360248
NCBI-ProteinID:
XP_053176616
LinkDB
All DBs
Position
6:29339557..29356494
Genome browser
AA seq
2338 aa
AA seq
DB search
MAATFPYRGGPPGIPPGVPPPAQVPDFMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDGSVVEWFYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELAEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDI
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMFG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccctatagaggaggccctccagggatcccaccaggtgtaccccct
cctgcacaggtcccagacttcatgtctgaggaaaaactgcaagagaaagcaaggaaatgg
cagcagttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtggatgcgcag
aaggaagacatgccacctgaacatgtccgcaagatcatcagggaccatggagacatgacc
aacagaaagtttcgtcatgacaagagggtctacctcggtgccctcaagtacatgccccat
gcagtgttgaagctgctggagaacatgcctatgccctgggagcagatccgagatgtgcct
gtcctgtaccacatcacaggagccatttcctttgttaatgaaatcccttgggttattgag
ccggtctacattgctcagtggggcaccatgtggatcatgatgcgtcgtgagaagcgtgat
cgtcgacacttcaaaaggatgcgctttccaccatttgatgatgaggagccgccgctggac
tacgctgacaacatccttgatgtggaaccactggaggccattcagatggagctggacccc
gaggaggatggctcagtggtggagtggttctatgaacaccagcccctcaaagacactgcc
aagtttgtaaatggcaccacctaccgtcgctggcagttcacactgcccatgatgtccaca
ctgtaccgactagccaaccagctgctgacagacttggtggatttcaactacttttatctg
tttgacctcaaggctttcttcacttccaaggccttaaatatggccatccctggaggacct
aagtttgagcccctggtccgtgacattaacctccaggatgaagactggaatgagttcaat
gacatcaacaagatcatcatcagacagcccatcaggacagagtacaaaatcgcattcccg
tacctgtacaacaacttgccacaccacgtccacctcacctggtaccacacacccaatgtg
gtgtttatcaagacagaggatccagatcttccagcgttctactttgacccgctgatcaac
cccatttcacacagacattctgtcaagagtcaagagcccctgcctgatgacgatgaagag
tttgagctagctgagtatgtggagcccttcctcaaggagaccccactctacacagacaac
actgccaatggcattgctctgctgtgggcgccaagacccttcaacctccgctccggccgc
acaagaagagccattgatatccccctgatcaagaactggtaccgtgagcattgccctgct
ggacagccagtgaaggtgcgtgtgtcataccagaaactgctcaagtactatgtgctcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtatctattccgctccttcaag
gcaacaaagttctttcagtccaccaagttggactgggttgaggtgggcctgcaggtttgc
agacagggttacaacatgctcaatctgcttatccaccgtaagaacctgaactacctacat
cttgactacaacttcaacctgaagcccgtcaagacactgacaaccaaggagcgtaaaaag
tcccgattcggtaatgccttccacttgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccatgtgcagtacagactgggaaacgttgatgccttccagttggctgatgga
ctgcagtacatcttcgctcatgtggggcaactgaccggcatgtaccgctacaagtacaag
ctgatgagacaaatccgcatgtgcaaagatctgaagcatctaatctactaccggtttaac
actggtcctgtgggcaagggaccaggatgtggcttctgggctcccggttggagagtgtgg
ttgttcttcatgaggggcatcactccactgttggagaggtggctgggaaatctgctggcc
aggcagtttgaaggacgtcactccaagggtgttgccaagacagtgaccaaacagcgtgtg
gaatctcactttgacctggagctgcgtgcagctgtgatgcacgacatcttggacatgatg
cccgagggaatcaaacagaacaaggccagaaccatcctgcagcacctgagtgagtcctgg
aggtgctggaaggccaacatcccctggaaggtgccaggcctgcccactcccattgagaac
atgatcctgcgctacgttaaggccaaagcagactggtggactaacacggcccattacaac
cgtgagcgtatccgtcgtggagccactgtggacaaaacggtctgcaagaagaacctggga
agactgacccgtctgtatctgaaagctgagcaggagagacagcacaactacctgaaggac
ggcccctacatcacagctgaagaggcggttgccatttacaccaccactgttcactggctg
gagagtcggcggttctcacccatccccttccctccactgtcctacaaacacgacaccaag
ctgctcatcctggctctggaaagactcaaggaggcatacagtgtgaagtctcgtctgaac
cagtctcagagggaagagctcgggctgatagagcaggcttacgacaatcctcacgaagct
ctgtccaggatcaaacgtcacctgctcactcagagagccttcaaagaggttggtattgag
ttcatggacctgtacagccatctggtgccagtgtatgacgtagagcccctggagaagatc
actgacgcctacctcgaccagtatctgtggtatgaagcagacaagagacgcctgttccca
ccttggatcaaacctgccgacactgaacccccaccgctgcttgtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtttgggagactgcggagggagaatgtaacgtgatgctg
gagtcccgctatgagaagatgtacgagaagattgatctgacgttgctcaacaggctgctg
cgtcttatcgttgaccacaacattgctgattacatgacggccaagaacaacgtggtcatc
aactacaaggacatgaatcacacaaactcatacggtatcatcagggggctgcagtttgcc
tcgttcattgtacagtactacggcctggtgatggacctgctggtgctgggcctgcaccgt
gccagtgagatggccggaccaccccagatgcccaacgacttcctcagcttccaggacata
cccacagagagcgcccatccaatccggctgtactgtcgctacatcgaccgtatccacatc
ttcttcaggttctctgctgacgaggccagggacctcattcagaggtatctaactgagcac
ccagaccccaacaacgagaacattgtgggttataacaacaagaagtgctggcctcgtgat
gcccgcatgagactgatgaagcacgacgtcaaccttggacgtgcagtcttctgggacatc
aagaaccgcttgccgagatcagtgaccacagtccagtgggagaacagctttgtgtcggtt
tacagcaaagacaaccccaacctactcttcaacatgtgtggctttgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcactcacaaggacggcgtctggaacctgcag
aacgaggtaaccaaagagaggacagcgcagtgtttcctgcgtgtggacgatgaatcaatg
cagcgtttccacaaccgagtgcgtcagatcctgatggcctccggatccaccacattcaca
aagattgtgaacaaatggaacacggctctgatcggcctgatgacgtacttccgtgaagca
gtcgtcaacactcaggagctcctggatctgctggtcaagtgtgagaacaagatccagaca
cgtatcaagatcggccttaactccaaaatgcccagtcgtttcccccctgtggtcttctac
actcccaaagagttgggtggcctcggcatgttgtccatgggccacgtgctgattccacag
tcagacctgcggtggtctaagcagacagatgtgggcatcacccacttcaggtctggaatg
agccatgaagaggaccagctgattcctaacttgtaccgttacattcagccgtgggagagc
gagttcattgactcccagagggtctgggctgagtacgccctcaagagacaggaagccatt
gctcagaaccgacgtctgactctggaggatttggaggactcgtgggacagaggaatcccg
cgtatcaacacacttttccagaaggacagacacacactggcttatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccattctggtggacccac
cagaggcacgacggaaaactgtggaacctgaacaactaccgcacagacatgatccaggct
cttggcggtgtggagggcatcctggagcacacgctcttcaaaggcacttatttccctacc
tgggagggtctcttctgggagaaggccagcggctttgaggagtccatgaagtggaagaag
ctgaccaatgcccagaggtctggtctcaaccaaatccccaaccgtcgcttcacactttgg
tggtcgcccacaatcaacagagccaacgtgtacgtgggtttccaggtgcagcttgacctg
actggtattttcatgcacggcaaaatccccacactgaagatctccctcattcagatcttt
agggctcacttgtggcagaagattcacgagagcattgttatggatctctgtcaggtgttt
gaccaggagctggatgctcttgagattgagactgtgcagaaggagaccattcaccccagg
aagtcatacaagatgaactcgtcctgtgctgacatcctcctctttgcatcatacaagtgg
aacgtctctcggccatctctgcttgctgactcaaaagatgtgatggacagcaccaccaca
cagaagtactggattgacattcagctgcgctggggagactatgactcacatgacatcgag
cgctacgccagggccaagttcctggactacaccacagacaacatgagtatctacccctcc
ccaacaggagtgctcattgctatcgacctggcttacaatctccacagtgcttatggtaac
tggttccctggaagcaagcctctgatccaacaggccatggccaagatcatgaaggccaac
cctgccctgtatgtgctcagagagcgcatccgcaaaggtctgcagctgtactcctcagag
cccactgagccgtacctgtcctcacagaactacggtgaactcttctccaaccagatcatc
tggttcgtagatgacaccaatgtctacagagtcaccatccacaagacctttgagggtaac
ttgaccacgaagcccatcaatggagccattttcatcttcaaccccagaaccggacagctc
ttcctgaagatcattcacacctctgtgtgggctggacagaaacgtctgggacagttggcc
aaatggaagacagctgaagaagtagctgccctgattcgctccctgcctgttgaagagcag
ccgaaacagatcattgtaaccagaaagggcatgctggaccctctggaggtccacttgctc
gacttccccaacattgtgatcaagggctcagagttgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctcatcctgaaagcgacagagcctcagatggtgctgttc
aatctgtatgatgactggctcaagaccatctcgtcttacacagccttctcccgactcatc
ctgatcctcagagcgctccatgtcaacaacgaccgcgccaaggtgatcctgaaacctgac
aagacaaccatcactgagccacatcacatttggcccactctcactgacgaggaatggatc
aaggtggaagtccaactcaaagacctcattctggctgactatggcaaaaagaacaatgtg
aacgtggcctctctgacccagtcggaaatccgtgacatcatccttggtatggagatctcc
gctccgtcacagcagcgtcagcaaatcgctgaaattgagaagcagaccaaagagcagtcg
cagctcacagccacacagacccgcactgtgaacaagcacggtgacgagatcatcacctcc
accacctcaaactacgagactcagaccttctcctccaagaccgaatggagggtcagggcc
atatctgctgccaacctccatctccgtaccaaccacatctacgtgtcatctgatgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctaaagaagtttatctgcatc
tcagatctgcgagcacagatcgcaggatacctctacggtaccagtccaccagacaacccc
caggtgaaggagatccgctgtatcgtcatggtaccacagtgggggactcaccaaactgtc
cacctgcccaaccagctgcctggacatgaataccttaaagagatggagcccctcggctgg
atccacacacagcctaatgaatcaccccagctgtccccccaggatgtcaccacccatgct
aaggtcatggctgacaacccctcttgggatggagagaagaccatcatcatcacttgcagc
ttcacaccaggttcctgcacactcacagcctacaagctgacacccagcggatacgagtgg
gggcgacagaacaccgacaagggcaacaaccctaaaggttacctgccatcccactacgag
agagtacagatgttgctttctgatcgtttcctgggcttcttcatggtccctggtcaagtc
tcctggaattacaacttcatgggtgtgcgtcacgaccccaacatgaaatacgacctgcag
ctcgccaaccccaaggagttctaccacgaagtccaccggccctcacacttcctaaacttc
gcctcactgcaggagggtgagatctataacgccgaccgcgaggacatgttcggctga
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integrated database retrieval system
