Scomber japonicus (chub mackerel): 128360415
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Entry
128360415 CDS
T09718
Symbol
tsr1
Name
(RefSeq) pre-rRNA-processing protein TSR1 homolog
KO
K14799
pre-rRNA-processing protein TSR1
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sjo03009
]
128360415 (tsr1)
Ribosome biogenesis [BR:
sjo03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
128360415 (tsr1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
Tsr1_G-like
NUSAP
Motif
Other DBs
NCBI-GeneID:
128360415
NCBI-ProteinID:
XP_053176820
LinkDB
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Position
6:complement(23904318..23915161)
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AA seq
836 aa
AA seq
DB search
MAKMAANGEKQQGHRAGIYKQKNKGHKHGKHRTKGEIERENKGRVSVTALTKKQRKEQKR
MDRRHKANQLRKNKKDMVLTEKRRLGTRDGPPHLVAVVALHAGVDAGAITKLLRGEGAGG
VIHQEKCIVGVSDSFGLILPRFKQRFTFLNQSTADIHSLLDMAKIADSLIFVLDSTEGWD
SYGDYCLSCLFAQGLPSHALVCQGVSDLPVKKRVDSRRALSKITEIRFPDTRLFPLDTEQ
DATLLLRHLGAQRQRKLGFRSRRSHLLAQHATFTPNSPAEGTGAGPTGLGTLCVSGYVRG
RPLRVDRLVHISGHGDFQLSQIDAPLDPLPLNITTPRTAKSGKGADVDMQVGDVDEAPVR
VLMKADPSNRESLHTEAEVDPMDGEQTWPTESELLEAEEARKNKRVMKVPKGTSDYQATW
IVDDGDDEDGDLDDESSEDDDGDDMMDEAMERDDEENNSQDAGSGCSEEEEEEEEEEEEL
CSTERAGADQRYDEHIDEAAEEEGLKRYREARSNEMFPDEVDTPRDTAARIRFQRYRGLK
SFRSSPWDPMENLPLNYSRIFQFQSFERTRRRILAEAAEEEEGAMVGWYVTLHITDVPFS
VMESVQSGRPLVLVSLLPHEQKMSVMHLLVRRHPSNTEPIKSKEELVFHCGFRRFKASPI
FSQHTTADKHKMERFLRPDAPTVVSVYAPITFPPTGVLLFKQRNDDIQDLVATGSLLSCD
PQRVVLKRIVLSGHPFKINRRSAVVRYMFFNRDDIMWFKPVELRTKWGRRGHIKEALGTH
GHMKCVFDNQMRSQDTVMMNLYKRVYPRWTYDPYVPLSLPWVKREITVDMEDLEME
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaatggctgcgaatggggaaaaacaacagggccacagagccggcatatataaa
cagaaaaacaaaggccacaaacatggcaagcatcgaacgaaaggtgaaatcgagagagaa
aacaaagggagagtgtccgtgacagccctcaccaaaaaacagaggaaagagcaaaagagg
atggaccgaaggcataaagccaaccagctacgcaagaataagaaagacatggttcttaca
gagaaacggcgtctaggcaccagggatggtcctcctcacttggttgctgtggtcgccctc
catgctggagttgatgctggtgccatcaccaaactgctacgtggagagggtgcaggaggt
gtcattcatcaggaaaagtgtatcgttggcgtcagtgacagtttcgggctgattctgcct
cgttttaaacagaggttcacctttctaaaccaaagcacggcggacatacattccctgctg
gatatggcaaagattgcagatagcctcatatttgtgctggactctactgaaggttgggac
agctatggagactattgtctctcctgtctgttcgcccagggcctccccagccacgctctg
gtgtgtcagggtgtgtctgatcttcctgtgaagaagagggttgattccaggagagctctg
tcaaagatcactgagatccgtttccctgatacccgtctcttccctctggatacggagcag
gatgccactctacttctcagacacctgggcgctcagagacagaggaagctgggtttccgc
tccagacgctcccatcttttggctcagcatgctacttttacccccaacagccctgctgag
ggaacaggtgctggacccaccggcctgggtaccctttgtgtctctgggtacgtccgtggc
cgtcctctacgagttgacagactggtgcacatcagtggacacggagactttcagctcagt
cagattgacgctcccttagaccctcttccccttaacataacaacacccagaacagcaaag
tctggcaagggagcagacgttgacatgcaggtcggtgatgtagatgaggctccagtgcgg
gtgcttatgaaggcggacccgtccaacagggaaagcctgcatacagaggctgaggtggac
cccatggatggagagcagacgtggcccacagaatcagaactgctggaggctgaagaggcc
agaaagaacaaacgtgtgatgaaggtccctaaagggacatcagactaccaggctacatgg
atcgtggatgacggtgatgatgaggatggtgatttggatgatgaaagcagtgaagacgat
gatggtgacgacatgatggacgaggccatggagagagatgatgaggagaataactcacag
gatgctggttcaggctgttccgaagaggaggaagaagaagaggaggaggaagaagagttg
tgctccacagagcgagctggagctgatcagcgctacgatgagcacatagatgaagctgca
gaggaagagggtctcaaacgttaccgtgaagcccgatccaatgaaatgttccctgatgag
gtggacacaccccgcgacacagcagctagaatcaggtttcagcgttacagaggattaaaa
agtttccgttcctctccctgggatccgatggagaacttgcctctcaactactcacgcatc
ttccagtttcagagctttgaacgcacccgccgccgcatactggctgaagctgcagaggag
gaggagggagccatggtgggctggtatgttacactgcacatcactgatgtgccattttct
gtgatggagagtgtccagtctggcagacctctagtattagtgtccctgttgccccatgaa
cagaagatgtcagtgatgcaccttttagtgagaagacaccccagcaatacagagccaatc
aaatctaaagaggagctggtgttccactgtggatttcggaggttcaaggcctctcctatc
ttctcccagcacaccacagctgacaagcataaaatggagcgcttcctcaggccagatgcc
cccactgtggtatcggtgtacgctcccatcaccttccccccaactggagtcctgctcttc
aaacaaaggaacgatgacatccaggacctggtggctacaggcagtctgctcagttgtgac
cctcagcgtgttgtcctgaagaggattgtactgagcggacacccgttcaaaattaaccgc
cgctctgcagttgttcgttacatgttctttaacagggatgatatcatgtggttcaagcca
gtggagctgcgaaccaagtggggtcggagaggccacatcaaggaggctttaggtacgcat
ggtcacatgaagtgtgtgtttgataatcagatgcgatctcaagacacagtcatgatgaat
ttgtacaagagagtttatcctcgctggacatatgacccctatgtgcccttgtcattaccc
tgggttaaaagagagattactgtggacatggaagacttggagatggaataa
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