Scomber japonicus (chub mackerel): 128360476
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Entry
128360476 CDS
T09718
Symbol
dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128360476 (dhx34)
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128360476 (dhx34)
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128360476 (dhx34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_DHX34
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_16
ResIII
Motif
Other DBs
NCBI-GeneID:
128360476
NCBI-ProteinID:
XP_053176888
LinkDB
All DBs
Position
6:complement(18787804..18800445)
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AA seq
1149 aa
AA seq
DB search
MSSGRGRDRTWDWDSPQCRAQLDEVFFRRHDYIQAGSSDHKEFWSFFDRFQRFKTKRDMS
GSGSHQKEAREEEGRDKRKSGKVDLDLPKHYDARYRINVSVCTRDIEERMGRSGKGSSGP
GPQETSDCRLALLHFLDFSQKQSFGKLAKLRREQKSLPIYQYRSKIVDLVRRHPVVVVAG
DTGCGKSTQVPQYLLSAGFQNIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFETT
RTTATKLLFLTEGLLLRQIQQDTTLAQYNVLIVDEVHERHLHCDFLLGVLRSLLASRPDL
RLILMSATINIKLFSDYFNSAPVLQVPGRLFPIQVIYQPIPSEEQPSRSEKLDPRPYLRI
LQGIDQRYPPEERGDLLLFLSGVAEISTIQEACQIYATHTHRWIVLPLHSTLSVAQQDKV
FDISPPGVRKCIISTNIAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASS
EQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIHRVALDSLILQMKSMHLGDPLSFVF
IDPPPAASIQAAVTYLKEQGALDSRGELTSIGSLLAQLPVDVVIGKMLVLGSLFNLVEPV
LTVAAAFSVQSPFLRSSQQNPDCATACQPLHSNQGDPFTLLNTFNAWVEVKGERGGGSRK
WCRRRGLEEQRLYEMVNLRRQFRDLLKSHGLLETVYSAPSGDDRKQRRDRLTERRKLHQL
KREHEQLEGSRRKVLKLEDGQDGELSSGSDTEEAGKGRKDKAGSGQNMDIQEVKFKLRHN
VSELQEAVSISQDLPSRQQALLKLLLCRGLYPQLALPDEHNSNRKDSEQVFHTRNKQGVV
IHPTSVFANDPEVLHVPEDETREMGPDRRDSSRHQVLAFVTLLETNKPYLSNCVRVPALQ
ALLLVANSIDSNADCARLVVDGWLELELRESEGALKVLSTALTLRAEWEHLLQAQLKQSP
TGEAAVQGVSRKVIEKLSENLVRFLLYTEISYSMRRLTAFQTQNLYIGPRPESELSQTKT
PDLNPLFPGMEAKPDPIKGGLRVTSFFTYNCLADSKDLYSECLRTFWTCPNCDLYMPLTP
LERMQHEASCRPAGGQQQLDKDPEDEKVATSSSASSLTRVYHCDVCNEDLNLTSTEILKH
KRQHMYSTK
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgggtcggggcagagaccggacttgggactgggacagcccgcagtgccgagcc
cagctggacgaggtcttcttccgcagacatgactacatccaggctggcagttcggaccat
aaagagttctggtctttctttgaccgcttccagaggttcaagacaaagagggacatgtct
ggatctggatcccaccaaaaagaagccagagaagaagaaggaagagacaagaggaagtct
ggaaaggtggatcttgatctccctaaacactacgatgctcggtaccggatcaatgtgtct
gtgtgtaccagggacatcgaggagcgcatggggagatcagggaagggctcctctggccca
ggtccccaggagacctcagattgccgcctggctctgctgcattttctggacttcagtcag
aagcagagtttcggtaaactggccaaactgagacgagagcagaagagcctacccatctac
cagtaccgcagcaagattgtggatctggtgcggcgccatcctgtggtggtcgtggcaggg
gacacaggctgcgggaagtccacccaggtcccccagtatctgctctctgctgggtttcaa
aacattgcctgtacgcagcctcgacgcatcgcctgtatatccctagcaaagagggtcagc
tttgagagtctcaatcagtacggatcaaaggtagggtaccagatccgctttgagaccacc
cggaccacagccaccaaactgctgtttctgactgaggggctgctgctgcggcagattcag
caggacacaacgctggctcagtacaacgtgctgatcgtggatgaggtccatgagaggcac
ctccactgtgacttccttctcggtgtcctgcgctctctgctggccagccgtccagacctg
cgtctcatcctcatgtctgccaccatcaacatcaaactcttctctgattatttcaacagt
gcccctgtgctgcaggtaccaggcaggctgtttcctatacaggtgatatatcagcccatt
ccttcagaggagcagccctcacgttcagagaagctggatcccagaccatacctgcgcatc
ctgcagggcatcgaccagcgttaccctccagaggagcgcggggacctgctattgtttctc
agcggcgtggcggaaatctccaccatccaagaggcctgtcagatttatgcaacacacacg
catcggtggatagtcttaccactgcacagcaccctctcagtggcccagcaggataaggtg
tttgacatctctcctcctggagtaagaaagtgcatcatctctacaaatattgctgagacc
tctgttactatagacggagtgcgctttgttgttgattcaggtaaagtaaaggaaatgagt
tttgatccgaaggcaaagatgcaacgtctgcaggagttctggattagccgagccagctcc
gagcagaggaaaggtcgagccggtcgtacaggcccaggagtttgttaccgcctctatgct
gagtctgactacgatgccttcgcaccttatcctgtacctgaaatccaccgggtggctctg
gattccctcattcttcaaatgaagagcatgcatcttggagatccactttcttttgtcttc
attgatccacctccagctgctagtatccaggctgcagttacttatctaaaggagcaggga
gctctagacagtcgtggtgaactgacatctatcgggagtttgctggcacaactgcctgta
gacgtagtcatagggaagatgctggtgctgggctctttgtttaacctggtggagccggtg
ttgacggtggcagcggcttttagtgttcagtcacctttcctgcgcagctcacagcaaaat
ccagactgtgcaaccgcctgccagcccctgcacagcaaccagggagaccctttcactctg
ctcaacaccttcaatgcctgggtggaggtgaaaggagagagaggtggtggctcaaggaag
tggtgtcggaggagaggtttggaggaacagcgactttatgagatggtcaacctacgcaga
cagttcagggacctgttgaagagccatggcctgttggagacagtgtacagtgctccctct
ggtgatgaccgtaagcagcgcagggacaggctgacggagaggaggaagctgcatcagctg
aagagagaacatgagcagctggagggcagcaggcgtaaagtcctcaagctggaagacggc
caggatggagagttgtcctcgggatcagacacagaggaagcaggcaaaggcaggaaggac
aaggcgggatcaggacagaacatggacatacaggaggtgaagttcaagttgcgtcacaac
gtgtcagagctgcaggaggcggtcagcatcagtcaggacctgccctcccgccagcaggct
ctgctcaagctgctgctttgccgaggtctctaccctcagctggctctgccggacgaacac
aactccaaccgcaaggactccgagcaggtgtttcacacaaggaataagcagggagtggtg
atccacccgaccagtgtgtttgccaatgacccagaggtgttacatgtgcctgaagatgag
accagagagatggggcctgatagaagggacagcagcagacaccaggtgctagcctttgtc
actctgctggagaccaacaagccgtatttgtccaactgtgtgcgggttccagcgctgcaa
gctctgctgctggtcgcaaactccatagacagtaacgccgactgtgcgcgtctggtggtg
gatggatggctggagttggagctgagggaatcagaaggggccctgaaggtgctgtccaca
gctctgacactcagggctgagtgggagcacctcctgcaggcccagctgaagcagagcccc
acaggagaagcagcagttcagggggtgtcccgcaaagtcatagagaagctgagcgaaaac
ttggtccgcttcctgctctacactgagatcagttacagcatgcggagactcacagccttc
cagacccagaacctgtacatcggccctcggcctgagtcggagctgtctcagaccaaaact
ccagatctaaacccgctgtttccaggaatggaggccaagccggatcctattaaaggaggg
ctgcgtgtcaccagtttctttacctacaactgcctggcggactcaaaggatctctacagt
gagtgtttacgcactttctggacctgtcctaactgtgacctctacatgcctctaactcca
ctggagcgcatgcagcatgaggcctcctgcaggccagcaggaggacagcagcagctggac
aaagatccagaagatgaaaaggtcgccacctcgtcctctgcatccagtctcaccagagtt
tatcactgtgacgtctgtaatgaagacctgaacctcacctctacagagatcctcaaacac
aaaaggcagcacatgtactccaccaaataa
DBGET
integrated database retrieval system
