Scomber japonicus (chub mackerel): 128360501
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Entry
128360501 CDS
T09718
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128360501 (npas1)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
128360501 (npas1)
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
128360501
NCBI-ProteinID:
XP_053176917
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Position
6:27278940..27304611
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AA seq
810 aa
AA seq
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MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRIFASQGDPPWSPLLEGDSNCSKVRRSSHSLA
TDIFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHTAPESASSSASTSSLAGTPEPAPSSPHSPADEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSARSVRRPLGLVALAHTLPPTTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLTPAEVVGHTCYHFIHVEDLENLRQSHE
DLLRKGQVVTNYYRWLQRRGGYLWIQSTATVSINHKAPHERNVIWVNYVLSRTELPDTPL
DVLQLPESIRAERLRISSSPTDSSQQARGSQSMKNSVGKSDPDTKAREKFGAAAIQSEDR
RKRLLRSDPEGAPPETRRRLEELRHTEESVSASSDLASESEGEEEEETEWDQGGDSDRLK
QEDGGGGGKHSRGGDTPTRGDRGGRVHNGRAVIQQLKSVVTPSPLPCSPSIKTEHEALTT
GGRWGSHTQTSTSHTHTTQPQPSHAHTPSSSLNGDSPTTPIPDSSSSSEAPPKGLFTPPS
PALSPAMSVSSPLPREERVVSGVVSRCSGGSGGPDFELLQRLAAGGAAGRVLFHPLALGP
QGPQSLYAPSTIRYAPPELPPSHHHSTGHSDGLQLRSDHHKGPPSAFFPHLQRLAGLPPF
SGFSPSDSPFSSGLPFCMNGLRGAAGSEED
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatgccgtttgtcagtgaggggaagtgtgtgagtgtggagtgggatttcttg
caaggactgttggccaagcctcccaccctgccctgtcttcagaacctgcgtaaagagaag
tctcgcaatgcagctcgttcgcggcgggggaaggagaatttcgagttctttgagctggcc
aagatgctgcctctgcccggggccatcaccagccagctggacaaagcctcggtcatccgg
ctgaccatcagttacctgcatatgcgcatctttgccagccagggagacccgccctggagc
cctctgctggaaggagacagcaactgcagcaaagtaagaagatcatctcactctctggcc
actgacatatttgaacagcatctaggggcgcacctcctgcagtctctggatggctttgtg
ttcgtggtcagtcaagagggacgatttctctacatctcagagacagtttctatctacctg
ggactctcacaggtggagctgaccggcagcagtgtgtttgattacatccacccagcggac
cacgttgagatggcggagcggctggggatcaggccgcatctgagggccgaggctggctgt
cacacggcccctgagagcgcttccagctccgcatccacctcctccctagctggaacccct
gaacctgctccatctagtcctcattctccagctgatgaacctcccgaccgcggtttcttt
atccgcatgaagtccactctcaccaaaagaggcctgcacgtcaaatcttctgggtacaag
gtgatccacgtgacaggacgaatccgatgccgccctgcacttgttccaggctctgcacgt
tcagtgcgtcgacctttgggtttggttgcattggcacacacactcccgcctaccacgctt
aatgaagtccgcatggagagccagatgtttgtcttccgagtgaacatggacctacaggtc
acatattgtgagaacaggatctcagagtacatggatctgaccccagcagaggtggtggga
catacctgttatcacttcatccatgtagaagatctggagaacctccggcagagccatgaa
gacttgctgaggaaaggccaggtggtgaccaattactaccgttggttgcagaggagagga
ggctacctgtggattcagtccacagctaccgtctcaatcaaccacaaagccccccatgaa
cgtaacgtcatctgggtcaattacgttctcagtcgaacagagttgcccgacacacccctg
gatgtactgcagcttccagagagcataagagcagagcgacttcgaataagctcctctccc
accgacagctcccaacaggcccgaggctcacagtcaatgaagaactcagtggggaagagt
gaccctgatactaaagccagagagaaattcggtgctgctgccatccaatcagaggacagg
aggaagcgcctgctgaggtccgaccccgagggcgctccacctgaaacccgacgcaggctg
gaagaactccgtcacaccgaagagagcgtgtcagcctcctcggacctggcgagtgaaagc
gagggggaagaggaggaagagacagagtgggaccaggggggagacagtgacagattgaaa
caagaagacggcggtggaggaggtaaacacagcagaggaggagacacccccactagaggg
gatagggggggcagggtgcacaacggccgggcagtgatccaacagctgaagagtgtagtg
accccgtctcccctgccttgcagccccagcatcaagactgaacacgaagccctgaccact
ggggggcgctgggggtctcacacacagacctccacctcgcacacacacaccacccagccc
caaccctcacatgcacacacaccctccagcagcctcaatggcgacagccccaccacccca
atacccgactcatcatccagcagtgaagcccctccaaaagggttgtttactcccccgtcc
ccagctctgtctcccgccatgtccgtgtcttccccgttgccccgtgaagagagggttgta
tcgggggtggtcagtcggtgcagtggaggtagcggcggtcctgactttgagctgctacag
agactggctgcaggcggcgcagcagggcgggtcctcttccacccccttgccctcggccct
cagggccctcagagcctctacgcccccagcactatccgctacgctccacctgagctgccc
ccctcccaccaccacagcacaggacacagcgatggcctgcagctacgctcggaccaccac
aagggacccccgtcggccttcttcccccacctacagcggctggctggcttgccacccttc
agtggtttctcgccgtctgacagccctttctcatctggcctgcccttctgtatgaatgga
ctgaggggggctgcaggctcagaggaggactga
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