Scomber japonicus (chub mackerel): 128360649
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Entry
128360649 CDS
T09718
Symbol
irx6a
Name
(RefSeq) iroquois-class homeodomain protein IRX-6a
KO
K24889
iroquois-class homeodomain protein IRX
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sjo03000
]
128360649 (irx6a)
Transcription factors [BR:
sjo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
128360649 (irx6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
128360649
NCBI-ProteinID:
XP_053177111
LinkDB
All DBs
Position
1:12960945..12965166
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AA seq
509 aa
AA seq
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MVTKEAAMSFSQFGYPYNATSQFFVSANPSTTCCDSISRSVSDGTGGSQTAAAAAAAASF
CCPSYENRLLASSRTELNAALGMYSSPYAAAAAASQNYANYFPYSTDPSAIYSTLNPQYD
IKDSTGTLHSGITQTAAYYPYDHSLGQYQYDRYGTVDFNGTARRKNATRETTSTLKTWLY
EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWSPKNKAGDDRKDDI
NKSDQECVTKDSSDCRDDKDLHLSDLDDMDNDDCDKLDSDCEKVAADEQDIQRAMAVAGA
PQKRDCSSELHLSLTNSFHAFPCAIKSVTTLPPLPSDFLDPVVSKAPSSTGSTGTLSLSH
FEASDKPRIWSLARTAASGVILSPQHGSEQRTGNSTGDCQLQSTRLTGAPTGQCGGMRGL
HESNSVTSAENPFPEGSSLRSKVYSTGSYSHKGLQLHCSSYAALPDTCQYSTIEGFSSGK
AETQSSDLSEACGTMQDDKVTAFRPVMKR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggtaacaaaagaagcagctatgtctttctcgcaatttggatacccttacaatgcaact
tcacagtttttcgtgtcggcaaaccccagtacgacttgctgcgattcgatttccaggtcg
gtctctgacgggacaggcggctcccagaccgccgccgctgccgccgccgctgcctccttc
tgctgcccgtcatacgagaaccggctcctggcgagcagccggacggagctgaacgcagcg
ctggggatgtacagctctccctacgccgcagcggccgccgccagccagaactacgccaac
tacttcccctacagcaccgacccatccgctatctactccactctgaacccacagtacgac
atcaaggacagcacaggcactttacactctggcatcactcaaacggctgcatactatcct
tatgatcattcactgggccagtatcaatacgacagatatgggacagtagactttaatggc
acagccagaagaaagaacgcaacacgagaaaccaccagcaccctgaaaacgtggttgtat
gagcaccgcaagaacccctaccccaccaagggagagaaaatcatgttggccatcatcacc
aaaatgaccctcacccaggtgtccacttggttcgccaacgccaggaggaggctaaagaag
gagaacaagatgacctggtcgccaaagaataaggccggcgatgacaggaaggatgacatt
aacaagagcgaccaagaatgtgtcaccaaagattctagtgattgcagggatgacaaagat
ttgcatctgagtgatctggatgacatggacaatgatgactgtgacaagctggacagtgac
tgtgaaaaagtggcagcagatgagcaggacatccagagagccatggcagtggctggagcc
cctcagaagagagactgcagctctgagctgcacctgagtttaactaacagcttccacgct
ttcccctgtgccatcaaaagtgtgaccaccctccctcctctcccatctgacttcctggat
cctgtagtgtcaaaggcaccctcttctactggctccacaggaacgttgtccctgtctcac
tttgaagcatcggataagccacggatttggtctctggctcgtacagcggcttcaggtgtc
atcctgagccctcagcatggatctgagcagaggacaggcaactcgactggggactgccag
ctccagagcaccaggcttaccggggcccctactggacagtgtgggggcatgagaggcctc
cacgaatcaaacagtgtcaccagtgctgagaaccccttccctgagggctcgtctttacgc
tccaaagtctacagcactggcagctacagtcacaagggcctccaactgcactgttcatcc
tatgctgcactcccagacacatgccagtactccaccattgaaggattctctagtggcaaa
gcagagacacagtcatctgacctcagtgaagcctgtgggaccatgcaggatgacaaggtc
actgcattcagaccagtgatgaagaggtga
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