KEGG   Scomber japonicus (chub mackerel): 128360700
Entry
128360700         CDS       T09718                                 
Name
(RefSeq) coatomer subunit beta'-like
  KO
K17302  coatomer subunit beta'
Organism
sjo  Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sjo04131]
    128360700
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sjo04147]
    128360700
Membrane trafficking [BR:sjo04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    128360700
Exosome [BR:sjo04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   128360700
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta WDR55 Beta-prop_WDR75_1st EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C DSE1_N Beta-prop_RIG_2nd Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_Aladin NBCH_WD40 ASA1 PEP5_VPS11_N Beta-prop_HPS5 ANAPC4_WD40 WDR90_beta-prop_4th CFAP251_N Beta-prop_SCAP Beta-prop_NOL10_N Beta-prop_LRRK2 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_SPT8 TRM82_WD PAC11 TPR_ZFYVE26 Clathrin
Other DBs
NCBI-GeneID: 128360700
NCBI-ProteinID: XP_053177165
LinkDB
Position
6:9645086..9655080
AA seq 1205 aa
MVASLYSGSVVVWNHESQTMVKVFELCDLPVRVARFVARKHWVIAGSDDMHIRVFNYNTL
ERVHLFEAHSDYIRCIAVHPTQPYILTSSDDMLIKLWDWDRKWACTQVFEGHTHYVMQIV
INPKDNNQFASASLDRTIKVWQLGSRTPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDR
LVKIWDYQNKTCVQTLEGHAQNVTCVSFHPELPIILTGSEDGTVRVWHSNTYRLENTLNY
GMERVWCICGQPGSNSVALGYDEGSIIIKLGREEPAMSMDSSGKVMWARHSEVQQANLKA
MGEAEMRDGEKLVLSVKDMGSCEIYPQTIQHSPNGRFVVVCGDGEYIIYTAMALRNKSFG
SAQEFVWAHDSSQYAIREGNSMVKLFKNFKDKKTFKPDFGAEGIFGGFLLGVRSNSGLAF
YDWENAELIRRIEIQPKHIFWSDSGELVSIATDESFFVLRYLPEKVAAAQESKEQMTEDG
IEDAFEVLGEVQEVIKTGVWVGDCFIYTSSVNRLNYYVGGEIITIAHMDRTMYLLGYIPK
DDRLYLGDKELNVVSFSLLLSVLEYQTAVMRRDFTTADKVLPTIPKEQRSRVANFLEKQG
FKKQALAVSTDPDHQFELALQLGELKTAYQLATEAESEQKWKQLAELATTKCQFSLAQEC
LHQAQDYGGLLLLATASGNATMVGKLAEGAERDGKTNVAFITYFMQGRLDKCLDLLIKTD
RLPEAAFLARTYLPSHVPRVVKLWKESLSKVNQKAADALADPTQYGNLFPGLQQTLVAEQ
YLKETHVRVRPAAEYPLITPNEDRNVLEESAGFVAKGEITEPEEVMESMDEAATTEAAPA
EVVLMEEPIPQEQGFVDDLLTTAEEEEEEVVITTEATTLPITEQEVEPILAPPVSSEVAA
PEPELEMEVEVESSVSVEEPIADIPPQEPEMVQPSPVEDIRSSVEEDLLEMSSATAVITS
ACASETSVIETSETIIATEEAPHEAVVEETIVTEDALVTTVLTDDIDVTASETIATEEAP
VDEELEKDVVGSEAPTTIDAVAAVNETPITVENVTSSVAVEELISFENTDSPLVDVLVPV
PVQSFPDLAADSLLDPLDDAMPVLEPVPAQEEQTTALPVKPEDKPKPAVPLQAEPEVLSP
AAVPAVGGVVEEAAPEGVEEPTEEPAEDLEADLNEEELDDLDLENLDLEDIDTTDVNLDD
DFLDD
NT seq 3618 nt   +upstreamnt  +downstreamnt
atggtggcgagcctctacagcggcagtgtagtggtctggaaccatgagtcacagacgatg
gtgaaagtatttgagctgtgtgatctgcccgtcagagtggccaggtttgtagccaggaaa
cactgggtgattgctggatcagatgacatgcacatccgcgtgttcaattacaacactctg
gagagagttcacttgtttgaagctcactctgactacatccgctgcatcgctgtccaccct
acacagccctacatcctcaccagcagtgacgacatgctgatcaaactgtgggactgggac
cgaaaatgggcatgcactcaggtgtttgagggacacacgcactatgtcatgcagatagtc
atcaaccctaaagacaacaaccagtttgccagcgcctcgctcgacagaactattaaggtg
tggcagctgggctccaggacccccaactttactctggagggccatgagaagggagtgaac
tgcatcgattactacagtggaggagacaaaccctacctcatatcaggggctgacgaccgc
ctggtcaaaatctgggattatcagaacaaaacctgtgttcaaactctggagggtcacgcc
cagaacgtgacctgcgtcagcttccaccccgaactgccaatcatcctcacaggctccgag
gacggcactgttcgagtatggcactccaacacctaccgactagaaaacacactcaactat
ggcatggagagggtgtggtgtatctgtggccagcctggatctaatagtgtggctttgggc
tatgatgaaggaagcatcatcatcaagctgggtcgggaggagccggctatgtccatggat
tccagtgggaaggtcatgtgggctcgccactctgaggtgcagcaggccaacctgaaagca
atgggagaagcagagatgagggatggagagaagctggtgctgagtgtcaaagacatgggc
agctgtgagatttacccccagaccatccagcacagccccaacgggagatttgtagtggtg
tgtggagacggggagtatatcatctacactgccatggccctgaggaataagagctttggc
tcagctcaagagtttgtttgggcgcatgattcctcacagtatgccataagggaaggaaac
agtatggtcaaactctttaagaacttcaaagataagaagactttcaaacctgactttggg
gctgaaggtatctttggtggcttcttactgggagtgagatcaaacagtggcctggccttc
tacgactgggagaacgccgaactgatccgccgcattgagattcaaccgaaacacatcttc
tggtctgactctggggagctggtgtccatcgccacagatgagtctttctttgtgctgcgc
tacctgccagagaaagttgcagcagcccaggagtccaaggaacagatgacggaagatggt
atcgaggacgcctttgaggttcttggggaggtccaggaggtgataaagacaggcgtttgg
gtgggagactgcttcatctacaccagctctgttaacagactcaactactatgttggcgga
gagattatcaccatcgctcacatggacaggaccatgtatctgctgggctacatccccaag
gatgaccgtctctacctcggagacaaggagctgaatgtagtcagcttctccctgctgctt
tcagtgctggaataccagacagctgtcatgaggagggactttaccacggccgacaaggtt
ctccccacaatccccaaggagcagaggagtagggtagccaactttttagaaaaacagggc
ttcaaaaagcaggccctggctgtgtccactgacccagaccaccagtttgaactggctctg
cagctgggagagctcaagacagcctaccaactggccacagaggcggagtcagagcagaaa
tggaagcagttggcagagctcgctactacaaagtgccagtttagcttggctcaggagtgt
ctgcaccaagctcaggattatgggggattattgctgctggccaccgcctcgggcaacgcc
accatggtgggaaaactggccgagggggcagagagggatggcaagaccaacgtggctttc
atcacctacttcatgcaggggagattggacaaatgtctggaccttctcatcaaaacagat
cgtttgccagaggctgcgttcctggcaagaacatatctgccaagccatgtgccaagggtg
gtaaaactgtggaaggagagtctgtccaaggtcaaccagaaggcagcagatgctctggct
gaccccacccagtacggcaacctgttccccggcctccagcaaaccctggtagctgagcag
tacctaaaggagactcatgtcagagtcagacctgcagcagaatatccactcatcacgccg
aatgaggaccgtaatgttctggaggaatctgcaggttttgtggctaaaggagagatcact
gagccagaggaagtgatggagagcatggatgaagcagcaacgacagaggctgcacctgca
gaagtagtattaatggaagagcccataccacaagagcaggggtttgttgatgatctttta
acaacagcagaagaagaagaagaagaagtagtcatcacaacagaagccaccactctgcct
ataacagagcaagaagttgagccaatactagcaccaccagtgtcctctgaggtggctgca
cctgaaccagagctggagatggaggtggaggtggagtcttcagtctctgtagaggaacct
atcgcagacattcccccccaagagccagagatggtgcagcccagtcctgtggaagatatc
agatcttcagttgaggaggatttgctggaaatgtcttcagcaactgctgtcataacttct
gcctgtgcttctgaaacttctgttattgaaacatcagaaaccatcattgcaacagaggaa
gcaccacatgaagcagtggtggaagaaaccatagtaacagaggatgccctagtaaccact
gttttaacagatgatattgatgtaacagcatcagaaactatagcaactgaggaagcacct
gttgatgaagaactggaaaaagatgtagtgggttcagaagcaccgaccactatagatgca
gtggcagcagtaaatgaaactcctattactgtggaaaatgtgacatcatccgtagcagtg
gaggagctcatcagttttgagaacacagacagtcctctggtagatgtgcttgttccagtc
ccagtccaaagctttccagatttggccgctgactcacttttagatccacttgatgatgca
atgccagtattggagccagtcccagcacaagaggaacaaaccacagcactcccagtaaag
ccagaggacaagccgaagcctgctgtgcctctgcaggctgagccggaggttttatcccca
gcagcagttcctgcagtggggggtgtagtggaggaggcagctcctgagggagtggaggaa
ccaacagaggaaccagcagaggacctcgaggcggatctgaatgaggaggagctggatgat
ctggatctggaaaaccttgacctggaagatatcgacactacagatgtcaacctggatgac
gatttcttggatgactag

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