Scomber japonicus (chub mackerel): 128360910
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Entry
128360910 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128360910
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128360910
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
LRR_6
SPRY
LRR_4
Glyco_hydro_67N
Motif
Other DBs
NCBI-GeneID:
128360910
NCBI-ProteinID:
XP_053177439
LinkDB
All DBs
Position
6:38460753..38536421
Genome browser
AA seq
1165 aa
AA seq
DB search
MKSDASMGPPLFFKDGQPADGKMQQQRADSPEPSCVSMKSDWSMPHPIRFKDGQPADGRM
QQQRADSPEPSCVSMKSDFSMDRPIKFKDEQPADGRVQQQSSEVPSDQSAQQHQTQLDSI
FMLLEENIVTFVKNELKRVQRGLTPDDPECLESQSEDEELLDGEEEEQRRSSREAFLKIT
VHFLRRMKQEELAEHLQSRTRAAKCRRKLKSNLEKKFQCVFEGIAKAGNPTLLNQIYTPL
YITEGGTAEVNDEHEVRQIETASRKPDRPETTIRQENIFKASPGRDEPIRTVMTKGVAGI
GKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNVVKEKKYSLVELVHHFFTETKEAGIC
RFEEFQVVFIFDGLDECRLPLNFKKNKILTDVTESTSVDVLLTNLIRGKLLPSARLWITT
RPAAANQIPSECVGMVTEVRGFTDPQKEKYFRKRFRDEEQARTIISHIKTSRSLHIMCHI
PVFCWITATVLEDVLKSREGGELPKTLTEMYIHFLVVQSKLKNVKYDGGAETDPHWSKKS
RKMITSLGKLAFEQLQKGNLIFYESDLTECGIDIRAASVYSGVFTQVFKEERGLYQDKVF
CFVHLSLQEFLAALHVHLTFIKSGVNLLATSFWSKVLKDKPEPTRFYQSAVDKALKSSNG
HLDLFLRFLLGLSLQTNQTLLQGLLTQTGSSSQTNQETVEYIKKKISENVSAERSINLFH
CLNELNDRSLVEEIQQYLRSGRLSTDKLSPAQWSALVFILLSSEKDLDVFDLKKYSASEE
VLLRLLPVVKASNKALLSGCNLSERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLS
AGLESPHCGLDTLRLSGCNLSERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLSAG
LESPHCGLDTLSLSGCLITEEGCASLASALRSNPSHLRELDLSYNHPGDSGEKLLSAGLE
DPHWRLDTLRMDHGGLQRLKPGVRKYACELELDPNTMNTNLKLSDNNRKVTHVEEDQPYP
DHPDRFDVYSQLLCRNDLTGRCYWEVEWSGSVYISVSYRRINRKGNSYDCWFGYNDQSWS
LYCSDDGYSVCHNKRETSISSSSSSSSSSSSVSNRVAVYVDCPAGTLSFYRVSSDTLIHL
HTFNTTFTQPLCAGFAVDYGSSVSL
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtgacgcgtctatgggtcctcctcttttctttaaagatggacaacctgctgat
ggaaagatgcagcaacagagagcagactctcctgaacccagctgtgtgtccatgaagagt
gattggtcgatgcctcatcctattcggtttaaagatggacaacctgctgatggaaggatg
cagcagcagagagcagactctcctgaacccagctgtgtgtccatgaagagtgacttctct
atggatcgtcctattaagtttaaagatgaacaacctgctgatggaagagttcagcagcag
agctcagaggttcccagtgatcagtctgcacagcagcatcaaacacagctggactccata
tttatgctgctggaggagaacatcgtcacttttgtgaagaacgagctgaagagagtccag
aggggtctgactccagatgacccagaatgcttagagagtcagagtgaggatgaggagttg
ttggacggtgaggaggaagagcagaggaggagcagcagagaggcatttctgaagatcaca
gtgcacttcctgaggagaatgaagcaggaggagctggctgagcatctgcagagcagaact
cgtgctgcaaagtgtcgacgtaaactcaagtctaacctggagaagaagttccagtgtgtg
tttgaggggatcgctaaagcaggaaacccaacccttctgaatcagatctacacaccgctc
tacatcacagagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaa
acagcatccaggaaaccagacagaccagaaacaacaatcagacaagaaaacatctttaaa
gcctcacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcatt
gggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccag
gacatacacttcacatttccattcactttcagagagctgaatgtggtgaaagagaaaaag
tacagcttggtggaacttgttcatcacttctttactgaaaccaaagaagcaggaatctgc
aggtttgaagagttccaggttgtgttcatctttgacggtctggatgagtgtcgacttcct
ctgaacttcaaaaaaaataagatcctgactgatgttacagagtccacctcagtggatgtg
ctgctgacaaacctgatcagggggaaactgcttccctctgctcgcctctggataaccaca
cgacctgcagcagccaatcagatcccttctgagtgtgtcggcatggtgacagaggtcaga
gggttcactgacccacagaaggagaagtacttcaggaagagattcagagatgaggagcag
gccagaaccatcatctcccatatcaagacatcacgaagcctccacatcatgtgccacatc
ccagtcttctgctggatcactgctacagttctggaagatgtgttgaaaagcagagaggga
ggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaa
ctgaagaacgtcaagtatgatggaggagccgagacagatccacactggagtaagaagagc
aggaagatgattacgtctctaggaaaactggcttttgagcagctgcagaaaggcaacctg
atcttctatgaatcagacttgacagagtgtggcatcgatatcagagcagcctcagtgtac
tcaggagtgttcacacaggtctttaaagaggagagggggctgtaccaggacaaggtgttc
tgcttcgtccatctgagccttcaggagtttctggctgctcttcatgtccatctgacattc
atcaagtctggagtcaatctgttggcaacatccttctggtctaaagtcttaaaagacaaa
cctgaacctacacgtttctaccagagtgctgtggacaaggccttaaagagttcaaatgga
cacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagactctt
ctacaaggtctgctgacacagacaggaagtagctcacagaccaatcaggaaacagtcgag
tacatcaagaagaagatcagtgagaatgtgtctgcagagagaagcatcaatctgttccac
tgtctgaatgaactgaatgatcgttctctagtggaggagatccaacagtacctgagatca
ggacgtctctccacagataaactgtctcctgctcagtggtcagctctggtcttcatctta
ctgtcatcagaaaaagatctggatgtgtttgacctgaagaaatactctgcttcagaggag
gttcttctgaggctgctgccagtggtcaaagcctccaacaaagctctgttgagtggctgt
aatctctctgagagaagctgtgcagctctgtcatcagttctcagctcccagtcctctagt
ctgagagatctggacctgagtaacaacaacctgcaggattcaggagtgaagcagctttct
gctggactggagagtccacactgtggactggacaccctcaggttgagtggctgtaatctc
tctgagagaagctgtgcagctctgtcctcagttctcagctcccagtcctctagtctgaga
gatctggacctgagtaacaacaacctgcaggattcaggagtgaagcagctttctgctgga
ctggagagtccacactgtggactggacaccctcagtctgtcaggatgtctgatcacagag
gaaggctgtgcttctctggcctcagctctgaggtccaacccctcccatctaagagagctg
gatctgagctacaatcatccaggagactcaggagagaagctgttgtctgctggactggag
gatccacactggagactggacactctcaggatggaccatggtggactgcagagactgaaa
cctggtgtgaggaagtatgcctgtgaactggaactggatccaaacacaatgaacacaaac
ctcaaactgtctgataacaacaggaaggtgacacatgtggaggaggatcagccatatcct
gatcatccagacagatttgatgtctactctcagctgctgtgtagaaatgatctgactggt
cgctgttactgggaggtcgagtggagcggaagtgtttatatatcagtgagttacagaaga
atcaacaggaaaggaaacagttatgactgttggtttggatataatgatcagtcctggagt
ctgtactgctctgatgatggttactctgtctgtcacaataagagagaaacatccatctcc
tcctcctcctcctcctcctcctcctcctcctctgtctctaacagagtagcagtgtatgtg
gactgtcctgctggcactctgtccttctacagagtctcctctgacacactgatccacctc
cacaccttcaacaccacattcactcaacctctgtgtgctgggtttgcagtcgactatggt
tcctcagtgtctctgtag
DBGET
integrated database retrieval system
