Scomber japonicus (chub mackerel): 128360928
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Entry
128360928 CDS
T09718
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04136
Autophagy - other
sjo04140
Autophagy - animal
sjo04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128360928 (atg16l1)
04136 Autophagy - other
128360928 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
128360928 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128360928 (atg16l1)
03029 Mitochondrial biogenesis [BR:
sjo03029
]
128360928 (atg16l1)
Membrane trafficking [BR:
sjo04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
128360928 (atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
128360928 (atg16l1)
Mitochondrial biogenesis [BR:
sjo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128360928 (atg16l1)
BRITE hierarchy
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
eIF2A
Nup160
Lectin_N
AP5B1_middle
KASH_CCD
CheY-binding
FPP
Fez1
Bacillus_HBL
Motif
Other DBs
NCBI-GeneID:
128360928
NCBI-ProteinID:
XP_053177460
LinkDB
All DBs
Position
6:37747980..37769309
Genome browser
AA seq
606 aa
AA seq
DB search
MAERQAGSSWKKHVSEQLKLRDRVQKHAFEEIIHQYLHLLEKADLQAVLSERYQTEKYDL
QRGHDAGSGADSGRSDALQQEMSQMRIKHQEELTELHKKRGELAQNVIELKNQIQEKDKE
IQNNEATMLDYQQQISKLEGDCRELRSFLQDLERANQTLKDEYDALQITFSALEEKLRKT
TEDNQELVSRWMAEKAVEANRLNAENEKDSRRRQAKLQKELADAAKEPLPLDPDDDIEVL
AEDSGKGGGETSPNRPLSRTSSKKVSQPPPGGLLDSISNIFGRRRTANSFSSSPEATEAP
TGVCAEVRVPCTALHVFDAHDGEVNAVRFSPGSRLLATGGMDRRVKLWDVVSGRCEPKGA
LTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLAARFLLDNA
RIASGSYDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCIMSGHFDKKVRFWDSRAETI
VQELELLGRVTSLDLNHDRTELLTCTRDDLVKIIDLRANAVRHTFSAQGFKCGADWTRVT
FSPDGSYIAGGSADGALYIWNVLTGKLDKTLDKNHNSAINSVSWSPSGTFVASVEKGSKA
ILWSDM
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggcaggcggggagctcgtggaagaaacacgtctcggagcagctgaagctc
agagatcgagtccagaaacacgcgttcgaggaaatcatccaccagtatctccacctgctg
gagaaagccgaccttcaggccgttctatcagagcgatatcagactgagaagtacgatctg
cagagaggacacgatgccgggtcgggggcagactctggtcgcagtgacgctctgcagcag
gaaatgtcccagatgagaatcaaacatcaagaagaactgacagagctgcacaagaagaga
ggagagctcgctcagaacgtcatcgaactgaaaaatcagattcaagaaaaagacaaagag
atccagaacaacgaggccacgatgttggattatcagcagcagatctctaagctggaggga
gactgtcgggagctccggagcttcctgcaggatctggagagagccaaccagacgctgaag
gacgagtacgacgcgctgcagatcaccttcagcgctctggaggagaagctgaggaagacc
accgaggacaaccaggagctggtctcacgctggatggctgagaaagctgtggaggccaac
cgcctcaacgctgagaacgagaaggacagcagacgcagacaggccaaactgcagaaggag
ctggccgacgccgccaaagagccgctgcccctcgacccggacgacgacatcgaggtgctg
gccgaggattctgggaaaggaggtggagagacgtcgcccaaccgaccgctcagccggacg
tccagtaagaaggtgtctcagccgccccccggaggtctgctggactccatctccaacata
tttggcaggcgtcgaaccgccaactccttcagctcgtcacccgaggccaccgaggcaccc
acgggcgtctgcgccgaggtccgggtcccctgcacggcgctgcacgtcttcgacgcccac
gacggcgaggtgaacgcggtgaggttcagccccggctctcgtctcctagcaacaggaggg
atggaccgacgcgtgaagctgtgggacgtcgtctcaggtcgctgtgagcctaaaggagct
ctgaccggcagcaacgcaggaatcaccagcatcgagttcgacagcgcaggctcgtatttg
ctcgccgcctccaacgacttcgccagtcggatttggaccgtagacgactacagactgagg
cacactctgacgggtcacagcgggaaggttctggcggctcgcttcctgttggacaacgct
cgaatcgcctccggaagctacgaccgaacactaaaactgtgggacctccgcagcaaagtc
tgtatcaagacggtgttcgcaggttcgagctgtaacgacatcgtgtgcacggagcaatgc
atcatgagcggacacttcgataagaaggttcgattctgggacagcagggcggagaccata
gtccaggagctggagctgctgggcagggtcacgtctctggacctgaaccatgaccgcacg
gagctgctgacctgcaccagagacgacctggtgaagatcatcgacctgagagccaacgcc
gtgagacacaccttcagtgctcagggcttcaagtgtggagccgactggaccagagtcaca
ttcagtcctgacggcagctacatcgccggaggatcagctgacggcgctttgtacatctgg
aacgttctgacggggaaactcgacaagactctggacaagaaccacaactctgccatcaac
tcggtgtcctggtcgccgtcgggaacgttcgtcgccagcgtggagaagggcagcaaagcc
atcctgtggtctgacatgtga
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