Scomber japonicus (chub mackerel): 128361558
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Entry
128361558 CDS
T09718
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03013
Nucleocytoplasmic transport
sjo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128361558
03015 mRNA surveillance pathway
128361558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128361558
Enzymes [BR:
sjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128361558
5.6.2.5 RNA 5'-3' helicase
128361558
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128361558
mRNA cycle factors
Common to processing body (P body) and stress granule
128361558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
128361558
NCBI-ProteinID:
XP_053178033
LinkDB
All DBs
Position
7:23326494..23343799
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGHTQSQLDGQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLCETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRTLKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRARGSANQGPGQGNGQ
SSQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
gcagagctgctcggagccgacactcagggctccgagtacgacttcaccgacttcaccctc
ccgagccagacgcagactcaaggccacactcagagccagctggacggacaggtaaatggt
cctgatgagggacttcacaacggcggggtggacgactctgtggctaaagccagtcagctg
ttggccgagctcaatttcgaggaggatgaagaagacacgtactacaccaaagatctgcct
gtgcacgcttgcagctactgtggtatccatgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgcaatggacgtggcaatacatctggcagccacattgtaaaccac
ttggtgagggccaaatgcaaagaagtgacgctgcataaagatggaccgctgtgcgagaca
gtgctggagtgttacaactgtggctgccgcaatgtcttcctcctgggcttcatcccagcc
aaggccgattctgtggtggtgcttctctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcccagtggcaaccactgatccaggaccgctgttttctg
tcctggctggtgaagatcccatcagagcaggagcagctccgggcgcgtcagatcaccgcc
cagcagatcaacaagttggaggaactctggaaggacaaccccagcgccaccttagaagac
ctggagaaacccggcgtggatgaggaaccccagcatgtgctgctgcgctatgaggacgcc
taccagtaccaaaacatctttggcccattggtcaaactagaggctgactatgacaagaag
cttaaggagtcccagacccaagacaatataacagttaggtgggacctggggctgaataaa
aagaggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgagatctgcctgcggtacaagggggacctggccccactgtggaagggcatcggc
catgtcatcaaagtccctgacaactatggtgatgaaattgccattgagttgcggagcagt
gttggagcacctgtagaaatcccccacaacttccaggtggactttgtgtggaagtcgact
tcctttgacaggatgcagagcgccctgaagacctttgcagtggatgagacctctgtgtct
ggctacatttaccacaaactgctgggtcatgaagtggaagatgtcaccatcaagtgccag
ctgcccaagcgcttcaccgcccagggcctgcctgacctcaatcactcacaggtgtacgct
gtgaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaaa
actgttacttctgccactatcgtctaccacctgtcccgtcagggcaatgggccagttctg
gtgtgtgctcccagtaacatcgctgtggaccagttgactgagaagattgacaagactggt
ctgaaggtggtcaggctgtgtgctaagagcagggaggccattgagtcacctgtgtcgttc
ctggccctgcacaaccagatcagtaacatggacagcatgccggagcttcagaaactacag
cagctgaaggatgagactggcgagctgtcgtctgccgatgagaagcgctacaggacccta
aaacgcaccgctgagagggagctgctcatgaatgctgatgtgatctgctgtacctgcgtt
ggtgctggagaccctcgtctggccaagatgcagttccgctccatcctgattgatgagagc
acccaggccactgagcctgagtgtatggtgcctgtggtgctgggagctaagcagctcatc
ctggtgggtgaccactgccagttgggtcctgtggtgatgtgtaagaaggcggccaaggca
ggtctgtctcagtccctgtttgaacgcctggtggttctggggatccggccaatccgtctg
caggtccagtaccgtatgcacccagctctcagtgccttcccctccaacatcttctatgaa
ggctccctgcagaatggcgtcactgcagctgaccgcatcaagaagggctttgacttccag
tggccacagccagacaaacccatgttcttctatgtgactcaaggccaggaggagattgcc
agctctggaacctcctacctcaacaggacggaggctgcaaacgtagagaaaatcaccaca
aggctgctgaaagcgggagccaagcctgaccagattggcatcatcaccccgtacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaggtggaaattgccagcgtggatgccttccagggcagagagaaggacttcatcatc
ctgtcttgcgttcgtgccaatgaacaccaaggcatcggcttcttgaatgaccctcgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcattgtggggaaccccaaggcc
ctgtccaagcagccgctgtggaacaacctgctcaacaactacaaggagcagaaggtcctc
gtggagggacccctcaacaacctgagagagagcctcatgcagttcagcaaaccgcgcaag
ctggtcaacaccatcaaccctgggggccgttttatgagcactgcgatgtacgatgcccgt
gaggccctcatccctggttccgcctacgaccgcagcaatgctgcaggacgtccgtccaac
atgtactttcaaactcatgaccagattgggatgattggggcgggccccggtcacatggca
gctatgaatatccccatacccttcaacttggtgatgcccccaatgcctccgcccagctac
ctcggccagaccaacggcccagctgcaggccgtggagcaatgaagggtaaacctgggcgc
ggtgggcgacagagggcccgcggctctgcaaaccagggtcccggtcagggtaacggacag
agcagccaagtcagccaggatggggcctcccagtccttctcacaggggccgctgactcag
ggctacatctccatgagccagccttctcagatgagccagcctggcctttcccagcccgag
ctatcccaggacagctacctgggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactcgacttaccagggtgaacgtgcataccaacatggtggagtgactggcctgtca
cagtactag
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integrated database retrieval system
