Scomber japonicus (chub mackerel): 128361654
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Entry
128361654 CDS
T09718
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo04136
Autophagy - other
sjo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128361654 (atg4b)
04136 Autophagy - other
128361654 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sjo01002
]
128361654 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128361654 (atg4b)
03029 Mitochondrial biogenesis [BR:
sjo03029
]
128361654 (atg4b)
Peptidases and inhibitors [BR:
sjo01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
128361654 (atg4b)
Membrane trafficking [BR:
sjo04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
128361654 (atg4b)
Mitochondrial biogenesis [BR:
sjo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
128361654 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Dysbindin
Motif
Other DBs
NCBI-GeneID:
128361654
NCBI-ProteinID:
XP_053178147
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All DBs
Position
7:7754583..7763703
Genome browser
AA seq
398 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSDPVWILGKEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALMCRHLGRDWRWARGQKQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
LLCMPWLDAAGACGESEGVGELNGCLEGACALSEEETALWKPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPYEDSQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCNRGGLPMFELVDSQPSHM
VSVDALNLTPVPFADFSDSDRLERFFDSEDEEFEILSL
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctaccttgacgtacgacacacttcgcttcggagaatttgaagattttcct
gagacctcagaccctgtgtggatcttaggaaaagaatacaatgcactcacagagaaagat
gagattttatcagatgtcacctcacgactgtggttcacgtacagaaaaaacttccctccg
atcgggggaacaggaccaacatcagatacaggatgggggtgtatgttgcgttgcggccag
atgatcctaggcgaggccttgatgtgtcgacatttaggaagagactggagatgggccaga
ggccagaaacaaagagaagagtacatcagtattctcaacgccttcattgacaaaaaagac
agctattattccatccatcaaattgctcaaatgggagttggagaggggaagcctataggc
cagtggtatggaccaaacacagtcgcccaggttctaaagaagctggcggtgttcgacaca
tggagcagattagttgtacacgtggcgatggacaacaccgtggtcatcgaggagatcaag
cttctttgtatgccttggctggatgctgcgggggcctgtggtgagtcagagggagtgggg
gagctcaatggctgcctggagggtgcgtgtgccctgtctgaggaggagacggctctgtgg
aaacctctcgtcctgctcattcccctcaggctgggcctgagtgatataaatgaggcctac
atcgaaaccctaaagcaatgcttcatgctgcctcagtccctgggtgttattgggggaaaa
cccaacagtgcccattacttcattggttatgtcggggaggagctcatctacttagacccg
cacaccacgcagcccgcggtggagccgtatgaagacagccaggtccctgatgagacatac
cattgtcagcacccgccctgccgcatgcacatctgtgaactggacccatccatcgcagcg
ggtttcttctgcagaacagaggacgagtttgatgactggtgtatgcgtataagaaggctc
tcctgcaacagagggggcttgcctatgtttgaactggtagacagtcagccttctcacatg
gtcagcgtggacgcccttaaccttactcctgttccctttgcagatttctccgactcggac
aggttggaacggttctttgactcggaagacgaggagtttgagatcctttccttgtga
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integrated database retrieval system
