KEGG   Scomber japonicus (chub mackerel): 128361678
Entry
128361678         CDS       T09718                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03030  DNA replication
sjo03410  Base excision repair
sjo03420  Nucleotide excision repair
sjo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    128361678 (rfc4)
   03410 Base excision repair
    128361678 (rfc4)
   03420 Nucleotide excision repair
    128361678 (rfc4)
   03430 Mismatch repair
    128361678 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sjo03032]
    128361678 (rfc4)
   03036 Chromosome and associated proteins [BR:sjo03036]
    128361678 (rfc4)
   03400 DNA repair and recombination proteins [BR:sjo03400]
    128361678 (rfc4)
DNA replication proteins [BR:sjo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    128361678 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    128361678 (rfc4)
Chromosome and associated proteins [BR:sjo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    128361678 (rfc4)
DNA repair and recombination proteins [BR:sjo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     128361678 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    128361678 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_11 AAA_22 AAA_30 AAA_assoc_2 AAA_16 ResIII AAA_14 AAA_28 DUF815 AAA_5 Gp44_lid Mg_chelatase SLFN-g3_helicase AAA_24 RuvB_N AAA_19 Cdc6_lid DNAX_ATPase_lid AAA_7
Other DBs
NCBI-GeneID: 128361678
NCBI-ProteinID: XP_053178185
LinkDB
Position
7:complement(4455367..4461306)
AA seq 358 aa
MQAFLKGGTVQATRPQKDKTAAGPSSEKKSRPMPWVEKYRPKCVDEVAYQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKN
FAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQASLRRIMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEKRLLDICEKEKLKYTKESIAALVKVSEGDLRKAITFL
QSAARLNVDKEISERSIIEIAGVVPPKMIDDLLQICFKGTFEKLEVAVRKIVDEGYAATQ
ILSQIHESIIEQDLNDKQKSAITEKMAVVDKCLADGADEYLQMLSLCSLIIQQSSQNN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggcctttttgaagggagggaccgtccaggctaccagacctcagaaagacaagaca
gcagcaggacccagctcagagaagaaatccagacctatgccatgggtagaaaaatataga
ccaaagtgtgtggatgaggtggcctatcaggaggaggtggtagcagtgctgaagaagtca
ctggaaggagcagatcttcccaacttgctgttctacggccctcctggaacaggaaagacc
tccaccatcttagctgctgccagagagctttatggtccggagttatatagacagagggtg
ctggagctcaacgcctccgatgaacgaggcatccaggtcgtcagggagaaggtcaagaac
tttgctcagctcactgtggctgggactcgcacagacggaaagtcatgtcctcctttcaaa
atcatcatcctggacgaggccgactccatgacaggagcagctcaggcctctctcagacgc
atcatggagaaggagtcccgcaccacccgcttctgtctcatctgtaactacatcagcagg
atcattgagcctctcacctccagatgttccaagtttcgcttcaagcctttagccaatcag
attcaagagaagcgtctgctggatatctgtgaaaaggagaagctcaaatacacgaaagag
agcatagcagcgttggtaaaggtgtctgaaggagacttgaggaaagccatcaccttcctc
cagagcgctgcccgcctcaacgtagacaaggagatctcagagcgttccatcatagaaata
gctggggtcgtccctcccaagatgattgacgacttgcttcagatctgctttaaaggaaca
tttgagaagctggaggtagcagtcaggaaaattgtagatgaaggctacgcagccacacag
atcctcagtcagatccacgagtccatcatagagcaggacctcaacgacaagcagaagtca
gccatcacggaaaaaatggcggtggtggataagtgcctcgcagacggtgcagatgagtac
ctacagatgttgagtctgtgttcactcatcatacagcagtcctcccagaacaactga

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