Scomber japonicus (chub mackerel): 128361678
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Entry
128361678 CDS
T09718
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03030
DNA replication
sjo03410
Base excision repair
sjo03420
Nucleotide excision repair
sjo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128361678 (rfc4)
03410 Base excision repair
128361678 (rfc4)
03420 Nucleotide excision repair
128361678 (rfc4)
03430 Mismatch repair
128361678 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sjo03032
]
128361678 (rfc4)
03036 Chromosome and associated proteins [BR:
sjo03036
]
128361678 (rfc4)
03400 DNA repair and recombination proteins [BR:
sjo03400
]
128361678 (rfc4)
DNA replication proteins [BR:
sjo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128361678 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
128361678 (rfc4)
Chromosome and associated proteins [BR:
sjo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
128361678 (rfc4)
DNA repair and recombination proteins [BR:
sjo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128361678 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
128361678 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_11
AAA_22
AAA_30
AAA_assoc_2
AAA_16
ResIII
AAA_14
AAA_28
DUF815
AAA_5
Gp44_lid
Mg_chelatase
SLFN-g3_helicase
AAA_24
RuvB_N
AAA_19
Cdc6_lid
DNAX_ATPase_lid
AAA_7
Motif
Other DBs
NCBI-GeneID:
128361678
NCBI-ProteinID:
XP_053178185
LinkDB
All DBs
Position
7:complement(4455367..4461306)
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGGTVQATRPQKDKTAAGPSSEKKSRPMPWVEKYRPKCVDEVAYQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKN
FAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQASLRRIMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEKRLLDICEKEKLKYTKESIAALVKVSEGDLRKAITFL
QSAARLNVDKEISERSIIEIAGVVPPKMIDDLLQICFKGTFEKLEVAVRKIVDEGYAATQ
ILSQIHESIIEQDLNDKQKSAITEKMAVVDKCLADGADEYLQMLSLCSLIIQQSSQNN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttttgaagggagggaccgtccaggctaccagacctcagaaagacaagaca
gcagcaggacccagctcagagaagaaatccagacctatgccatgggtagaaaaatataga
ccaaagtgtgtggatgaggtggcctatcaggaggaggtggtagcagtgctgaagaagtca
ctggaaggagcagatcttcccaacttgctgttctacggccctcctggaacaggaaagacc
tccaccatcttagctgctgccagagagctttatggtccggagttatatagacagagggtg
ctggagctcaacgcctccgatgaacgaggcatccaggtcgtcagggagaaggtcaagaac
tttgctcagctcactgtggctgggactcgcacagacggaaagtcatgtcctcctttcaaa
atcatcatcctggacgaggccgactccatgacaggagcagctcaggcctctctcagacgc
atcatggagaaggagtcccgcaccacccgcttctgtctcatctgtaactacatcagcagg
atcattgagcctctcacctccagatgttccaagtttcgcttcaagcctttagccaatcag
attcaagagaagcgtctgctggatatctgtgaaaaggagaagctcaaatacacgaaagag
agcatagcagcgttggtaaaggtgtctgaaggagacttgaggaaagccatcaccttcctc
cagagcgctgcccgcctcaacgtagacaaggagatctcagagcgttccatcatagaaata
gctggggtcgtccctcccaagatgattgacgacttgcttcagatctgctttaaaggaaca
tttgagaagctggaggtagcagtcaggaaaattgtagatgaaggctacgcagccacacag
atcctcagtcagatccacgagtccatcatagagcaggacctcaacgacaagcagaagtca
gccatcacggaaaaaatggcggtggtggataagtgcctcgcagacggtgcagatgagtac
ctacagatgttgagtctgtgttcactcatcatacagcagtcctcccagaacaactga
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integrated database retrieval system