Scomber japonicus (chub mackerel): 128361716
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Entry
128361716 CDS
T09718
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sjo04131
]
128361716 (lingo3a)
Membrane trafficking [BR:
sjo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
128361716 (lingo3a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
LRRNT
LRR_LRWD1
LRR_9
Cupin_1
LRR_Zer-1
V-set
LRR_6
Motif
Other DBs
NCBI-GeneID:
128361716
NCBI-ProteinID:
XP_053178235
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Position
7:complement(13366153..13367985)
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AA seq
610 aa
AA seq
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MGVSLGQDVGWLLPFLFLLVMIMVSPTQSQGCPQRCECIAKLKTVSCHGKRLSALPDGIP
LDTKILDLSGNKLRWVEHGDLLPYPRLEKLDLSENMISVLEPNAFSSLQNLQLLSLRGNE
LKLVPMGAFSRLSNLTSLDLSGNRIVILLDFTFQDLKNLRNLEVGDNDLVYISNKAFLGL
VGLRELTIERCNLTSVSSQSLSYLHNLVTLKLRYLSISALEDQNFRKLGNLRGLEIDHWP
FLEYISPHSLQGLNLSWLSITHTNITSVPTSALRSLAHLTSLNLSYNPISVLESWALRDL
VRLKELHLVNTNLVMVQPYALGGLRQIRLLNLSTNSLVTLEEGAFQSVNTLETLRLDGNP
LACDCRLLWILQRRKTLYFDGAAPVCMTPVEVQGRALSAFSDSALFDHFTCQKPKIRNRK
LQQISAREGQVVSFICKAEGEPMPVIFWISPQRRRITTKSSGRLTVLPEGTLEIRYAQVT
DSGTYICIASNAGGNDTYFATLTVSGLPLDAALMANRTYYAGDLNDTNLNDTRVFLKFTL
DLKTILISTAMGCIMFLGVVLFCFILLFVWSRGRGQHKNNFSVEYSFRKVDGPAASGGQG
GARKFNMKMI
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgggggtaagcctaggccaggatgtgggctggctcctgcctttcttattcttgctggtg
atgatcatggtgtcaccgacccagagccaaggatgtccccagcgctgcgaatgcattgca
aagctcaagactgtgtcctgtcatggtaaacgcctctctgcactgccagatggcatcccg
ttagacaccaagatcctggacctaagtgggaataaacttcgctgggtagagcatggtgac
ctgctcccatatccacgtcttgaaaagctggacctgagtgagaacatgatcagtgtcctg
gaaccaaacgctttttctagtctccagaatctgcagttgctttcactcaggggtaacgaa
ttgaaactggtccccatgggggctttctcacgtctctctaacctaacttcattggacctt
agtgggaataggattgtaattcttttggactttactttccaagacctgaaaaatctaagg
aacctggaagttggagacaatgatctggtttatatctctaacaaggcctttttaggtcta
gtgggactgagggagctgaccattgagaggtgcaacctgacctctgtgtccagccagtct
ttgtcttacctgcataatctggtgactctaaagctccgctacctcagtatctctgcctta
gaggaccagaacttccgtaaactgggaaacctgaggggtctagagattgatcactggccc
tttttggagtacatttcccctcacagcctgcaggggcttaatttgtcttggctgtcgatt
acgcacaccaacatcacctctgtacccacttcggccctacgcagtttagctcacctcacc
agtctcaacctttcctacaaccctatttctgtcttggagtcctgggcgctgagggacctt
gttaggttgaaagagctgcatctagtcaacaccaacctagtgatggtgcagccatatgca
cttggtggtctaagacaaattcgcctccttaacctctccactaacagcctggtgaccctg
gaggagggggcttttcagtctgtcaacactctggaaacgctgcgtttggatggaaatcct
ctggcttgtgattgccgcttgctctggatcctccagcgcaggaagacactatattttgac
ggtgctgccccagtgtgcatgacgcctgttgaggtgcagggaagggctcttagtgctttc
tctgactcagctctctttgaccactttacttgccagaagcccaaaatccgcaacaggaaa
ctgcagcaaatatctgcccgtgaggggcaggtggtgtcattcatttgcaaagcagagggt
gaaccaatgccagtgatattctggatctctcctcagcgtcgccgcatcaccacaaagagc
agtggacgcctaactgtattaccagaaggcacactagaaatacggtatgcccaggtaaca
gacagtggaacttacatctgcattgcaagcaatgctggtggaaatgacacttattttgcc
acacttacagtgagtgggctgccgctagatgcagccctcatggccaaccgtacctactac
gctggggaccttaatgacacaaatctaaacgataccagagtcttcttgaagttcactctg
gacctcaagaccatccttatatccacagcaatgggctgtatcatgttcctgggggtcgtc
ctcttctgtttcattctgctgtttgtgtggagtcgtgggagaggacagcacaaaaacaat
ttctcagtggaatattccttcagaaaagtggatggacctgctgccagtggaggacagggt
ggggcacgcaagttcaacatgaaaatgatttga
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