Scomber japonicus (chub mackerel): 128362067
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Entry
128362067 CDS
T09718
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128362067 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sjo03041
]
128362067 (prpf38a)
Spliceosome [BR:
sjo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128362067 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
128362067 (prpf38a)
BRITE hierarchy
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
128362067
NCBI-ProteinID:
XP_053178680
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All DBs
Position
7:complement(34179644..34189172)
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AA seq
309 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLSAELVVDKAMELKYVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEYIDDLLHSERMCDIILPRLQKRQVLEEAEMLDTR
ISALEEDLDEVESSDEEDEEEEKLERLQTPEPHRRGYRDNDRPRRSPSPRYRRSRSPRRR
SRSPKRRSPSPRRDRHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKSPERSSKKS
HKKSRRGNE
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagaacagttaaagatgcgaacagtatacacggcaccaacccacaatatctg
gtggagaaaatcatccggactcgaatatacgagtctaaatactggaaggaggaatgtttc
ggtctgagcgccgagctggtcgtcgacaaagcgatggagctgaagtatgtcggcggcgtt
tacggtggaaacatcaagcccactcccttcctctgcctcacgctgaagatgctgcagatt
cagcccgagaaagacatcatcgtagagttcataaaaaacgaggatttcaaatatgttcgt
ttactcggagcgatgtacatgaggttaactggcaccgctgtggattgttataaatacctg
gagcctctttacaacgactacagaaaaatcaaaagtcagaacagaaatggagagttcgag
ttgatgcatgttgacgagtacatagacgaccttcttcattcagagagaatgtgtgacatc
attctgccgaggctccagaagagacaagtcctggaggaggcggagatgttggacacacgt
atcagcgctctggaagaagacctggatgaggtggagagcagtgatgaagaggacgaggaa
gaagagaagttggagagactccagacccctgaaccccacaggcgcggttaccgtgacaac
gacagacctcgccgctccccgtcacctcgctacagacgcagccgctcccccagacggagg
agcagatctccgaagaggcgaagcccgtctccccggagagaccgccatcgcagcaagagc
ccccgccgccaccgcagccggtcccgagacaggcgccatcgctccaagtccccaggtcac
cacagaagccacagacatcgcagccactcaaagtctccagagaggagctcaaaaaagagt
cacaagaagagtcgaagaggaaacgagtga
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