KEGG   Scomber japonicus (chub mackerel): 128362067
Entry
128362067         CDS       T09718                                 
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
sjo  Scomber japonicus (chub mackerel)
Pathway
sjo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sjo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128362067 (prpf38a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sjo03041]
    128362067 (prpf38a)
Spliceosome [BR:sjo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    128362067 (prpf38a)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    128362067 (prpf38a)
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 128362067
NCBI-ProteinID: XP_053178680
LinkDB
Position
7:complement(34179644..34189172)
AA seq 309 aa
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLSAELVVDKAMELKYVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRKIKSQNRNGEFELMHVDEYIDDLLHSERMCDIILPRLQKRQVLEEAEMLDTR
ISALEEDLDEVESSDEEDEEEEKLERLQTPEPHRRGYRDNDRPRRSPSPRYRRSRSPRRR
SRSPKRRSPSPRRDRHRSKSPRRHRSRSRDRRHRSKSPGHHRSHRHRSHSKSPERSSKKS
HKKSRRGNE
NT seq 930 nt   +upstreamnt  +downstreamnt
atggcaaacagaacagttaaagatgcgaacagtatacacggcaccaacccacaatatctg
gtggagaaaatcatccggactcgaatatacgagtctaaatactggaaggaggaatgtttc
ggtctgagcgccgagctggtcgtcgacaaagcgatggagctgaagtatgtcggcggcgtt
tacggtggaaacatcaagcccactcccttcctctgcctcacgctgaagatgctgcagatt
cagcccgagaaagacatcatcgtagagttcataaaaaacgaggatttcaaatatgttcgt
ttactcggagcgatgtacatgaggttaactggcaccgctgtggattgttataaatacctg
gagcctctttacaacgactacagaaaaatcaaaagtcagaacagaaatggagagttcgag
ttgatgcatgttgacgagtacatagacgaccttcttcattcagagagaatgtgtgacatc
attctgccgaggctccagaagagacaagtcctggaggaggcggagatgttggacacacgt
atcagcgctctggaagaagacctggatgaggtggagagcagtgatgaagaggacgaggaa
gaagagaagttggagagactccagacccctgaaccccacaggcgcggttaccgtgacaac
gacagacctcgccgctccccgtcacctcgctacagacgcagccgctcccccagacggagg
agcagatctccgaagaggcgaagcccgtctccccggagagaccgccatcgcagcaagagc
ccccgccgccaccgcagccggtcccgagacaggcgccatcgctccaagtccccaggtcac
cacagaagccacagacatcgcagccactcaaagtctccagagaggagctcaaaaaagagt
cacaagaagagtcgaagaggaaacgagtga

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