Scomber japonicus (chub mackerel): 128362592
Help
Entry
128362592 CDS
T09718
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin-10 isoform X1
KO
K16499
protocadherin delta 2
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128362592 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128362592 (si:ch73-233f7.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
128362592
NCBI-ProteinID:
XP_053179376
LinkDB
All DBs
Position
8:16206387..16212396
Genome browser
AA seq
1004 aa
AA seq
DB search
MDHRLSRASWVPVTGLVISLLLCACVVDLVLAQIRYSIPEELEHGAFVGNIAEDLGLDVA
KLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCERSPNCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWSEFNLDITESAAPGSCFPLESAQDQDVGTNSLRSYQLSANEH
FVLNIQTRNDGSKFAELVLDTPLDREQQKKHEMVLTAFDGGSPERSGTALITITVLDAND
NVPVFDRSVYRASLVENAPRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFSVDP
YTGEIRVKGIVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDILDVNDNAPEVILTSVST
PVQEDAPPGTVIAVISVMDRDSGENGNVDCQIPSNVPFQLHSSFKNYYTLVTSEYLDREA
VSEYNITLTARDLGSPSLSTRKTILVQVSDINDNPPRFSQPSYTVYVTENNAPGASICSV
TAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQILVQA
QDAGFPPLASNVTVNVFVLDQNDNAPIIISPLPKNGTVATEVVPRSVDAGYLVTKITALD
ADAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRLVEKDVTRQRLVILVKDNGQPPLS
ATVSIVLTVVDSVPESLSDFGDLTLSPQPPSNLALYLIVSLSTISLIFLVAIIVLAAVKC
YKDRETISGYNLPPFACCCCGGFQPEPPPEVFKKSNLNLQISSAAKVPTNCMEVNGNSSL
SQSYCYKVCLTPESAKSDFMFLKPCSPGSTPRNNEAKSAENSWNAQSRSASVNNGATTPN
ELKQPNTDWTLTKNQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTHMR
GMKEYKMSPSTSGVPSRPWTPRCTPPPQQQQPSIPPHPHPHPPPDYHHNVYIPGTPSGFC
TLRPTVQRSELDVHNSFSTFGKKRRLQMSPQGEAAMINNDLYND
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggatcacagactctccagggccagctgggtaccggtgactgggcttgtcatatctctg
cttctgtgtgcttgtgtggtggacctggttctagcacaaattcggtactccattcccgag
gagctggaacatggagcttttgtaggcaacatcgccgaagatctcggcttggatgtggct
aaactgtctgcccgtcgcttccgtatagtctccggtgcaaaaaagcagtatttagaagtg
aatttggagaatggcattctcttcgtcaacgaaaaaattgacagagaggagctttgtgaa
cgaagcccgaactgttttttacacttacaagtggttattgaaaacccattagaactctac
agagtggaagtggagattttagatgtaaatgacaactctcccagtttcccatggagcgag
tttaatcttgacatcacggagtcggctgcgcctggctcctgtttcccgttggagagcgca
caggaccaagacgtgggcaccaactctctgcgctcctatcagctcagcgcaaacgagcac
ttcgtactgaatattcagacgcgcaacgacggaagcaagtttgctgagctggtgctagac
actccactggaccgggaacagcagaaaaagcacgaaatggttctgactgcttttgacggg
gggtcaccggaacgctctgggacagcattgataactattacagtattagatgcaaacgat
aacgtgcctgtatttgatcgttcagtttaccgggcgagcctggtggagaacgcaccgagg
gggacgctggtcctgaagctgaacgccaccgatctggatgagggctcgaatggggaggtg
acctacgcgtttagtgggcacgcgccactcaaggtgcgtgaactgttcagcgttgacccg
tatacgggtgaaatcagagtgaaaggcattgtggactatgagaaagccagtgtatatgaa
ctgtatgtgcaggcaaaagacaggggaccctcggctgtggcggttcacagtaaagtgctg
gtagacatcctggacgtgaatgacaacgcgcccgaagtcatcctcacatcagtgtccact
cctgttcaggaagatgcgccaccgggcactgtgatagctgttattagtgtcatggaccgg
gactcgggagagaacgggaatgttgattgccaaattccgagcaacgttccctttcagctc
cactcatcctttaaaaactattacactctagtgacaagcgagtatctggacagggaagcg
gtgtccgaatacaatatcaccctcacagcccgcgacttgggctctccttcgctctccacc
aggaaaaccatcctcgtccaagtgtctgacattaatgacaaccccccgcggttctctcaa
ccttcatacacagtgtatgtgaccgagaataatgccccgggcgcttccatttgctctgta
actgcattcgaccccgattctaaccagaacgcctatctgtcttattccattctcgagggt
cagattcagggtatgccagtgtccacttatgtctccatcaactctgacaacggcaatatc
tacgcactgcgctcttttgattatgagcaacttagaaactttcagattctggtacaggct
caggatgccggtttccctcctctcgccagtaatgtcactgtcaacgtctttgttttggac
cagaacgacaacgcacctattattatatccccactgcccaaaaacggcacagtggccaca
gaggtggttccgcggtcagtggacgctggctatctggttaccaaaataacagcgttagac
gctgacgcaggacaaaactcccggctatcctatcaggtgttgcaggctacagatccaggg
ctgttcagtgtggctctgtacacgggggaaatcaggactattcgccggttagtggaaaaa
gacgtaacaagacaaagactagtaatattagtcaaggacaacggacagccgccgctctcc
gctaccgtctccattgtcctcacagtggtagacagcgtgcccgagtccctgtcagatttc
ggagacctcacactcagcccacagcccccctcaaacctcgctctctacttgatcgtgtcg
ctgagcaccatatctttaatattcttggtggctattatcgtactagctgcggttaagtgc
tacaaggacagagaaaccatcagcgggtacaacctccccccgttcgcctgctgctgttgc
ggggggtttcagcccgagccgcccccagaggtgttcaaaaaatccaacctcaacctacag
atttcatccgcggccaaagtgcccacgaactgtatggaggtgaatggaaacagtagtctc
tctcagtcatattgttataaagtgtgcctgacccctgaatcagccaaaagtgactttatg
tttctgaagccgtgcagtccaggtagcacgccgaggaacaatgaggcgaagagcgcagaa
aactcgtggaacgcgcaaagccggagcgcatctgtgaacaacggagcgactacccccaac
gagctgaagcagccaaacacagactggaccctcacaaagaatcagaattcctccattaaa
agttataactcaattaacatggatggcaccctcatgcgtaaggctatgcacgcagaccca
gaaaactatgtcacctccatggcacctggacagtactggacctggggcacccacatgagg
ggtatgaaagaatataagatgtctccttcaacaagtggagtcccctctcgtccctggact
cctcggtgcacgcctcctcctcaacagcagcagccatcgatcccacctcaccctcaccca
catccacctcctgactatcatcacaatgtgtacatccctgggacaccatcaggcttctgc
accttgaggcccactgtacagcgaagtgagctggatgtccacaactctttctccaccttt
ggcaagaagcggcgtcttcagatgtctccccagggagaggctgcaatgataaataatgac
ttgtacaatgactga
DBGET
integrated database retrieval system
