Scomber japonicus (chub mackerel): 128362734
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Entry
128362734 CDS
T09718
Name
(RefSeq) protocadherin alpha-3-like
Organism
sjo
Scomber japonicus (chub mackerel)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
K319L-like_PKD
Motif
Other DBs
NCBI-GeneID:
128362734
NCBI-ProteinID:
XP_053179554
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Position
8:16262244..16265236
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AA seq
797 aa
AA seq
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MAVTDITGQWLHVWISFCLALLIVTHLEGISAQIRYSILEESKSGTAVGNVAKDLGLDLG
SLADRNLRVVSGTKQDLFKVNPRDGVLLVNQKVDREDLCGNTVPCVTNLKAVIENPLEMH
QVIVEILDVNDNAPKFPEENYTLEVLESAIVGSRFQMEGAHDLDVGLNSLQSYKLNHNPY
FRLETEEFGEDGKVPFLILQRPLDREHTTQHWLLLTAADGGKPSKSGTINITVVVSDVND
NSPVCDRQKYTITVKENAPAGTFLLTINASDSDDGMNGEIEYSIRSKLRGLSSEPFDLNS
RSGKLTVKEGLDFEEKQIYEIKVLAADKGVVSLSTHCNVVVRVEDVNDNQPEIDITSLSS
RIPEDAPPGTVVALVGVTDHDSGVNGQVVCSVPGHLPFDLKPSPDGQSYSLVTIDNLDKE
TIHMYNITITAKDLGTPTLSSTKVIKVDVLDVNDNSPLFTESPYTFYVLENNKPGTSVFS
VSAADADSDENAAVTYSLDHKRPGPTVTSFLNINEVSGTISALKSFDFETLKTFHFQVVA
TDSGTPSLSSNVTVNVFILDQNDNAPVILYPVSSNGSAEGVEEIPRNVNAGHLVTKVRAY
DADIGYNGWLLFSLQEVTDHTLFGLDRYTGQIRTLRSFTETDEAEHKLVILVKDNGNVSL
SATATVIVKVVEPKEAFAAADVTSEANNQGENNVVFYLTITLGSVSVLFLVSIIVLIAMQ
CSKTTDYSSKYLQDANYDGTLCHSIQYRSGDKRYMLVGPRMSIGSTIVPGSHANTLVLPN
RRRASEEALPISGSSLM
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaacggacatcacgggacaatggctgcatgtgtggatttctttttgtctggcg
ttgctaattgttactcatttggaaggaatctctgcgcaaatacgatactcaattctggag
gaatcaaaatcgggcacggcagttggaaatgtagccaaagaccttggattagatcttggg
agcctggcggataggaatcttcgtgtcgtgtcaggaacaaagcaggatctgtttaaggta
aatccgagagatggagttttgttagtgaaccagaaagtagacagagaagacctgtgtgga
aacacggttccgtgtgtcacaaacctgaaagcagtgatagaaaaccctctggaaatgcat
caagtaatagttgaaatactcgatgtaaacgacaatgcacctaaatttcccgaggaaaac
tacacattagaggtgctggaatccgccatagttggatcccgatttcagatggaaggggca
cacgatttagatgttggactgaattccttacagtcgtataaactaaaccataacccatat
tttcgcttggaaactgaggaatttggggaggatggaaaggttcccttccttatactacag
cgacctttggatagagaacacactactcaacactggttactgttaacagctgctgatgga
ggtaaaccatccaaatctggtactattaatatcactgttgttgtatcggatgtaaatgac
aactcaccagtgtgtgacagacagaaatacactattacggtaaaggaaaacgcacctgca
ggtacatttctcctgacaataaatgcatctgactcggatgatgggatgaacggtgagatc
gaatattctatacggagtaaactaagaggactctcatctgagcccttcgatttaaatagt
agaagtggcaaactgactgtgaaagaaggccttgatttcgaggaaaagcaaatctatgag
attaaggtactggctgcagacaaaggtgtcgtgtctttgtccacacactgcaacgtggtt
gttagagttgaagacgtgaacgataaccaacctgaaatcgacatcacatccctctcaagt
cgcattccagaggatgcacctcctggcacggtggtggcgttggtgggagtgacggatcat
gactcaggtgtgaacggacaggtggtctgcagtgtgccgggtcacctgccttttgactta
aagccatccccagatggacagtcatactcattggttaccatagacaacctagataaggag
acaatacatatgtataatattacaataacggctaaggatttagggacacctactctgtca
tccacaaaggtgataaaagtagatgtactagatgttaatgataatagtcctttgttcact
gaaagcccatacactttttatgtgcttgaaaacaacaagcctgggacatcagttttttca
gtgagcgcggctgatgctgattcagatgaaaatgcggcagtaacatactcactcgaccat
aaacgtccaggacccactgtgacttcttttttaaatataaatgaagtcagtggcaccatt
tcagcgctgaaaagttttgacttcgaaactctgaaaacgttccacttccaagtagtggcc
acagattctggaactccgtcactaagcagcaacgtcacagtgaacgtgttcattctggat
cagaacgacaacgctccagtcatcctgtatccagtcagctccaacggttctgctgaaggt
gtggaggagattccccgcaatgtcaacgcaggacacttggtgactaaagtcagagcctat
gacgctgatataggatataacggctggttactgttttcactgcaggaagttactgaccac
actctctttggtttggaccgctatacaggacagatcagaacacttcgctcattcacagag
acagacgaggctgagcataaactggtcatactggtgaaagacaatggcaacgtttcactc
tcagcaacagctactgtgattgtcaaagttgtggagcccaaagaagcttttgcagctgct
gatgttaccagcgaggcaaacaatcaaggagaaaataatgttgtattttacttgacaata
actttgggctcagtgtctgtactttttctcgtcagtatcattgttctgattgcaatgcag
tgctccaaaaccacagactattcctcaaagtatttacaagatgctaattacgacgggaca
ctgtgtcacagcatccagtacagatctggagacaaacgctacatgttagttggacccagg
atgagtataggatctactattgttccgggcagccatgcaaatacgctagtgctccccaac
aggaggcgggcatcagaagaggccctacccatctctggatcatctctgatgtag
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