Scomber japonicus (chub mackerel): 128362781
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Entry
128362781 CDS
T09718
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like
KO
K12597
protein AIR1/2
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128362781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sjo03019
]
128362781
03016 Transfer RNA biogenesis [BR:
sjo03016
]
128362781
Messenger RNA biogenesis [BR:
sjo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128362781
Transfer RNA biogenesis [BR:
sjo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128362781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
VSG_B
zf-CCHC_2
AIR2-like_ZnK4
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
128362781
NCBI-ProteinID:
XP_053179609
LinkDB
All DBs
Position
8:complement(18756999..18765316)
Genome browser
AA seq
480 aa
AA seq
DB search
MDFAKENEDDDDGEEAGGEDELFFIEGSSCSENEEGHSSCKQAVQRSRGGSPPLLLAFSI
TSGQLVHDTSPDSQEEDGDDSDQYIDDWMILEGEEQEGDSSIQLNLSYRNSISDDDSQDE
DQNMKSVKDTWAVSEKDKSFMDQSLLSQYFVRGRPQMCHICNRAGHLAKSCYIHRKCPTC
ILCGIQGHFQRDCPRRPCPICGLPSHGLRPCENPPTWNQHCERCGMTGHFSDACPDIWRQ
YHMTIRLEIPPSPQKVHSRKHKRRPAHCYNCSKMGHYGYECTKRRMISGTSPSLPYVCHY
DTMEDILQRRTRMQRESKEVGSLLLSEQQQSEPTGESSEENQTAQWKSKRNQEARSRGSR
RKTWPERRRERQEVKRLRREAQARREGGLLLRSQGHSDDEACTADPLRSALYGHGQSTPP
PQKKMRRDEAGGRRSRKSREAERWKKRGGMKRGDLYTYVDLDSRSKNLLSPKQRVRHRRR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggactttgcgaaggaaaacgaagatgatgatgatggtgaagaagccggtggcgaagat
gagctcttttttattgagggctccagttgttcagaaaatgaagaaggacacagcagctgc
aaacaagctgttcagcgaagcaggggaggctctcctccactcctcctggccttctccatc
acctctggacagctggtgcacgacaccagccccgactcacaggaggaggacggagatgac
agtgaccagtacatcgatgactggatgatcttggaaggagaagagcaggagggagactca
agcattcagctcaatctaagctacaggaacagcatctctgacgatgactctcaagatgaa
gatcagaatatgaaatcagttaaagatacctgggctgtatcagagaaggacaagagtttc
atggatcagtctctgctcagccaatactttgtgcgtggtcgtcctcagatgtgtcacatc
tgcaacagggcgggacacctcgccaaaagctgctacatccacaggaaatgtcccacctgt
atcctttgcgggatccagggccacttccagagggactgcccacgccgaccctgccccatc
tgtggactgccctcacatggactcagaccctgtgaaaatcccccaacttggaaccaacac
tgtgaacgctgcgggatgacaggacacttctctgacgcctgccccgatatatggagacag
taccacatgacaatccggttggagattccccccagcccacagaaagtccactcacgcaaa
cataagagacggcctgctcactgttacaactgctctaagatgggacattatggctatgag
tgcactaaaaggaggatgatcagtgggacatctccctccctgccgtatgtttgccactac
gacaccatggaggacatcctccagcgtcgcaccaggatgcagagggaatccaaagaggtt
ggatccctgttgctctcagagcagcagcagtccgaaccaacaggggagagtagcgaggag
aatcagacagcacagtggaagagcaagaggaaccaggaggcacggagccggggcagcagg
aggaagacttggccagaaaggcgcagagagagacaggaggtgaagaggctgaggagggag
gctcaggccagacgtgaaggaggactactgctgaggtcccagggtcactctgatgatgaa
gcctgcactgcagatcccctcaggtccgccctttatggtcatggacagtccacaccccct
ccacagaagaaaatgaggagggatgaggcaggtggcagaaggagcaggaagagcagagaa
gcagagaggtggaagaagagaggggggatgaaacgtggagatttatatacatatgttgac
cttgacagcagaagtaaaaaccttctttccccaaagcagagggtacgccaccgaagaaga
taa
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