Scomber japonicus (chub mackerel): 128362868
Help
Entry
128362868 CDS
T09718
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
sjo
Scomber japonicus (chub mackerel)
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sjo04054
]
128362868
Pattern recognition receptors [BR:
sjo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128362868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
NOD2_WH
LRR_6
SPRY
LRR_4
Motif
Other DBs
NCBI-GeneID:
128362868
NCBI-ProteinID:
XP_053179696
LinkDB
All DBs
Position
8:34198840..34223472
Genome browser
AA seq
1212 aa
AA seq
DB search
MNIETKKQHRPRPRPRPGPGPGPSCVSMESDRSMFEPIYFKHGQPADGRIHQRPESPGPE
PSCVSMKSDRSYDFIINFKGGRPSADQIVDQESSEVPSGQSAQQHQTHLDSIFMLLEENI
VTFVKNELKKMQKLLSPDYPECLESQREDEEVLDGEEEEQRRSSREAFLKITLHFLRRMK
QEELADCLQSRTGAEKCRRKLKSNLEKKFQCLFEGIAKAGNPTLLNQIYTPLYITEGGTA
EVNDEHEVRQIETASRKPDRPETTIRQEDIFKASPGRDEPIRTVMTKGVAGIGKTVLTQK
FTLDWAEDKANQDIHFTFPFTFRELNVVKEKKYSLVELVHHFFTETKEAGICRFEEFQVV
FIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIRGKLLPSARLWITTRPAAANQI
PPECVGMVTEVRGFTDPQKEEYFRKRFRDEEQASTIISHIKTSRSLHIMCHIPVFCWITA
TVLEDVLKSRERGELPKTLTEMYIHFLLVQSKLKNIKYDGGAETDPHWSPENREMIESLG
KLAFEQLQKGNLIFYESDLTECGIDIRAASVCSGVFTQVFKEERGLYQDKVFCFVHLSVQ
EFLAALHVHLTFIKSGVNLLAEQTTSRWSKVFKDKPEPTCFYQSAVDEALKSPNGHLDLF
LRFLLGLSLQTNQILLRGLLTRTGSSSQTNQKIVQYIKKKLSENVSAERSINLFHCLNEL
NDRSLVEEIQQFLRSGSLSTHYLSPAQWSALVFILLSSENDLDVFDLKKYSASEEALLRL
LPVVKASNKALLTDCNLSERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLSAGLES
PQCGLETLRLTDCNLSERSCAALSSVLSSQSSSLRDLDLSNNNLQDSGVKQLSAGLESPH
CGLETLSVSGCLITEEGCASLASALRSNPSHLRELDLRYNHPGDSGEKILSAGLEDPHWR
LDTLSLQPAGVRWLTPGLRKYFCELELDPNTANRKLKLSDNNRKVTHVEEDQSYPDHPDR
FDSWPQLLCRNDLTGRCYWEVEYRGNVSISVSYRRISRKGYSYDCRFGGNDQSWCLQCSD
GDYSVCHNKRKTSISSSSSSSSSSSSSSSSSSSSSSVSNRVAVYVDCPAGTLSFYRVSSD
TLIHLHTFNTTFTEPLCAGFGVWSGSGSSVSLARGRVSRLQMLKRSGSERKLTDSPNPVS
KLRSLPARLTGG
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaacaaagaagcagcacagacctagacctagacctagacctggacctgga
cctggacccagctgtgtgtccatggagagcgatcggtccatgtttgaaccaatatatttt
aaacatggacaaccagctgatggaaggatccatcagagaccagaatctcctggacctgaa
cccagctgtgtgtccatgaagagcgaccggtcatatgactttatcattaattttaaagga
ggacgtccatcagctgatcagatagtggaccaggagagctcagaggttcccagtggtcag
tctgcccagcagcatcaaacacacctggactccatatttatgctgctggaggagaacatc
gtcacttttgtgaagaacgagttgaagaagatgcagaagcttctgagtccagattaccca
gaatgcttagagagtcagagggaggatgaggaggtgttggacggtgaggaggaagagcag
aggaggagcagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgaag
caggaggagctggctgactgtctgcagagcagaactggtgctgaaaagtgtcgacgtaaa
ctcaagtctaacctggagaagaagttccagtgtctgtttgaggggatcgctaaagcagga
aacccaacccttctgaatcagatctacacaccgctctacatcacagagggagggactgca
gaggtcaatgatgaacatgaggtcagacagattgaaacagcatccaggaaaccagacaga
ccagaaacaacaatcagacaagaagacatctttaaagcctcacctggaagagatgaacca
atcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacagaag
ttcactctggactgggctgaagacaaagccaaccaggacatacacttcacatttccattc
actttcagagagttgaatgtggtgaaagagaaaaagtacagcttggtggaacttgttcat
cacttctttactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggttgtg
ttcatctttgatggtctggatgagtgtcgacttcctctggacttccacaacactgagatc
ctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcaggggg
aaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatc
cctcctgagtgtgtcggcatggtgacagaggtcagagggttcactgacccacagaaggag
gagtacttcaggaagagattcagagatgaggagcaggccagcaccatcatctcccacatc
aagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgct
acagttctggaggatgtgttgaaaagcagagagagaggagagctgcccaaaaccctgact
gagatgtacatccacttcctgttggttcagtccaaactgaagaacatcaagtatgatgga
ggagctgagacagatccacactggagtccagagaacagggagatgattgagtctctggga
aaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgaca
gagtgtggcatcgatatcagagcagcctcagtgtgctcaggagtgttcacacaggtcttt
aaagaggagagagggctgtaccaggacaaggtgttctgcttcgtccatctgagtgttcag
gagtttctggctgctcttcatgtccatctgacattcatcaagtctggagtcaatctgctg
gcagaacaaacaacatccaggtggtctaaagtctttaaagacaaacctgaaccaacatgt
ttctaccagagtgctgtggacgaggccttaaagagtccaaatggacacctggacttgttc
ctccgcttcctcctgggtctttcactgcagaccaatcagattctcctgcgaggtctgctg
acacggacaggaagtagctcacagaccaatcagaagatagttcagtacatcaagaagaag
ctcagtgagaatgtgtctgcagagagaagcatcaatctgttccactgtctgaatgaactg
aatgatcgttctctagtggaggagatccaacagttcctgagatcaggaagtctctccaca
cattatctgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaac
gatctggatgtgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctg
ctgccagtggtcaaagcctccaacaaagctctgctgactgactgtaacctctcagagaga
agctgtgcagctctgtcctcagttctcagctcccagtcctctagtctgagagatctggac
ctgagtaacaacaacctgcaggattcaggagtgaagcagctttctgctggactggagagt
ccacaatgtggactggaaactctcagactgactgactgtaacctctcagagagaagctgt
gcagctctgtcctcagttctcagctcccagtcttctagtctgagagatctggacctgagt
aacaacaacctgcaggattcaggagtgaagcagctttctgctggactggagagtccacac
tgcggactggaaactctcagtgtgtcaggatgtctgatcacagaggaaggctgtgcttct
ctggcctcagctctgaggtccaacccctcccatctgagagagctggacctgagatacaat
catccaggagactcaggagagaagatcctgtctgctggactggaggatccacactggaga
ctggacactctcagcctgcagcctgctggagtccgatggttgacaccaggtctgaggaag
tatttctgtgaactggaactggatccaaacacagcaaacagaaaactcaaactgtctgat
aacaacaggaaggtgacacatgtggaggaggatcagtcatatcctgatcatccagacaga
tttgactcctggcctcagctgctgtgtagaaatgatctgactggtcgctgttactgggag
gtcgagtacagaggaaatgtttctatatcagtgagttacagaagaatcagcaggaaagga
tacagttatgactgtaggtttggagggaacgatcagtcctggtgtctgcagtgctctgat
ggtgattactctgtctgtcacaataagagaaaaacatccatctcctcctcctcctcgtcc
tcgtcctcgtcctcctcctcctcctcctcctcctcctcctcctcctctgtctctaacaga
gtagcagtgtatgtggactgtcctgctggcactctgtccttctacagagtctcctctgac
acactgatccacctccacaccttcaacaccacattcactgaacctctgtgtgctgggttt
ggagtctggtctgggtctggttcctcagtgtctctggctcgcggacgcgtctcgcggctg
cagatgctgaagagaagcggatcagaacggaaactcaccgactcaccgaacccggtaagt
aagctccggtctctgcccgcccggttaacgggaggttaa
DBGET
integrated database retrieval system
