Scomber japonicus (chub mackerel): 128362892
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Entry
128362892 CDS
T09718
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
sjo
Scomber japonicus (chub mackerel)
Pathway
sjo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sjo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128362892 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sjo01009
]
128362892 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sjo04515
]
128362892 (pcdh11)
Protein phosphatases and associated proteins [BR:
sjo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128362892 (pcdh11)
Cell adhesion molecules [BR:
sjo04515
]
Cadherins
Protocadherins
128362892 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
128362892
NCBI-ProteinID:
XP_053179725
LinkDB
All DBs
Position
8:18312952..18427719
Genome browser
AA seq
1268 aa
AA seq
DB search
MDLASQAHVLVVLLTCMVLLCLAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFKDSELEITVPENAPMGTSVVQLHATDADLGSNAQIHFAFSNQISASTRRHF
AIDSSTGLITVKQPLDREQTPVHKLIILASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFTIDKTTGNITLQEKILAADQGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKNLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNLSQ
TPEKSFNSPPPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLSFPQEEFYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQSPGSNSPASTPTTTAISGTLPSFGFQQSCTRGSKANMGCMGIMDGR
HTLGRSVPKRDELDKGINRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQQTPTGGGSS
SFLHEHQL
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtcaggctcatgtgctggtggtcttgctcacctgcatggtcttgcta
tgcctggcccaggagagggactacacggtgaaggaggagcagccagagaacgtccgtatt
gggaacctgcgcaaggacctagacctcaacctagaccccaacattaggttatcctcgccg
ctgcagttcaagcctgtgtacaagacaggtgacgtgcctttggtgagggttgaggccaac
acgggggagatctttaccaccaatcacagaatcgacagagagaagctatgctcgggcgtc
ttcgctgagaaacgctgctactatgagattgaggtggccgtgctacccgatgagatcttc
cgattggtcaagattcgtttcttgatagaggatgtgaatgacaacgcgccccttttccag
tccactgtaataaacatctccatcccagagaacacagccatcaatacccggtatccagtg
ccctcagcgtttgaccctgatgtagggatcaatggaatccaacattatgaactagtcaag
agtgtcagcgagtttggcttagacatcatcgagactcctgagggtgacaagtggccacag
ctaattgttcagcagaacctggatcgtgagcagaaggacacctttgtcatgaagataaag
gtggaggatggtggcaaccctcccaagtccagcactgccattcttcaagtaaccatctct
gatgtcaatgacaatcgtcccatctttaaggacagtgagctggagatcacagtacccgag
aatgcccccatggggacatcagttgttcagctccatgccacagatgcagaccttggttct
aacgcacagattcattttgccttcagcaaccagatctctgcctcaacaagacggcacttt
gccattgacagctctacaggactgatcactgtaaagcagccactggacagggagcaaacg
cctgtccacaaactcatcattctggcaagtgatggcagctccaccccctccagagccaca
gtgattgttaatgtaacagatgttaatgacaatgttccctccatagacactcgttacatt
atcaacctggttaatgggactgttctgctgtctgagaatgcacctctcaacaccaaaata
gctctaattactgttactgacaaggacgcagatctctatggcaaagtagcttgctacact
gaccatgatgttccttttcggttgaagcctgtctttaatgatcaattcttactagagaca
gctgcccccctagattatgagactacgcgagaatatgcaattaagatagtggcctcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaac
gacaatgcacccatctttccccagccggaaatccaactttccataccggagaataatgac
ccttccacacagttaataaaaatcagcgccactgacgcagacagtggacataatgctgag
atcatttatactctcggccctgatgcgcctgatgggttcaacatagacagacgttcagga
atcctctctgttggcaaacgactggacagagagaagcaggagaggtattcattcactgtc
atagcaagggacaatggttccacatccctgcagagcaatgtcactgtcaggctaatcgtc
caggacctcaatgacaacagcccagctttcacacaccctgaatataacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagtcacagacgcagatgcagga
gataatgctgttataaccttgtccattttgaatgggaaagataatttcatcatcgacccc
cagactggtgtgatcaaacccaatatcacttttgatagggagcagcaaagctcatacaca
tttatggtcaaggcagttgatggaggtcaacctccgagctcttcctacgccaaggtcact
ataaatgtagttgatgtgaacgacaatcgccctgtgttcgtcatcccatcctccaattat
tcatatgacctagtgcggaccaccaccacccctggtgctgtggtcacaagagtctttgcc
attgacaatgacacaggtatgaatgctgagctgcagtatagtattatcagcagcatcatc
atcacgtctagggtctcccctcgaggtctcttcaccattgacaaaacaacgggtaacata
acactgcaggagaaaattttggcggctgatcaggggctacatagactggtcgtcaaggtc
aaggatctaggccagcctgagtcattacatgctattgcacttattcacttgtttgtcaat
gacactgtctcaaatgctacctttatccaagagcagctgcgaaaaagtatggagacaccc
ttggaccgtaacataggggacagtgaggtaacacctcaagctaatggatatgtgattgtc
gtcatagctatcatagcagggaccatgactgtcatcttggtaatatttgtgactgccttg
gtgcgttgccggcagacacccaggcacaaagtggtacagaagggcaagcagagtggtgaa
tgggtgtcgccaaaccaagagaaccgtcagatcaagaagaagaagaagagaaagaagcga
tcacccaagaacctcctcctgaactttgtgaccatagatgaatccaagcctgacgacccc
acccatgagcatgttaatggtacattggatctccctgtggagctagaggagcaaaccatg
gggaagtacaactgggctaccacgcccaccaccttcaaacctgacagcccagacttagcc
aagcattacaagtctgcatcccctcaacctacatttcaaattaaaccggaaactccagtg
gccccaaagaaacaccatgtgatccaggagctccccttggacaacacattcgtggtgggc
tgtgactcactctccaagtgctcatcgactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacagaatctgagccag
acaccggagaagtcttttaactcaccgccccccatttgtcctcataaggaggcctgtcaa
cttggcaagataacctctgtgaatacccagcgccgtgtgacgttccatcttccagacggt
tcccaggagagctgcagtgacagcgggctaggagacccagagcctagcagcactgccagc
accacccagcctcttcccctcagcttcccccaggaggagttctatgagcaaacatcacct
aacagccgcactgagggagacggaaactcagaccctgaatccactatcgaggtgaacctg
cagaaagctttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tctgacagctgttggatgcccccagccctggcccagttccagagtcctggcagcaacagc
cccgcctccacccctaccaccactgccatctctggtacgctcccctcctttggctttcag
cagagctgtacccgtggatccaaagctaacatgggctgcatggggatcatggatggtcgc
cataccctgggcaggtctgtgcctaaaagagatgaactggacaaagggatcaaccggcca
cagttctacaacaccctggacagacactgcagtagtaagaaggaggatcccgtcaaggtc
atccccctggcaagcttctcctcccctgggcagcagacgcctaccggtgggggcagcagc
tccttcttacatgagcatcagttgtaa
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